BtaINT0102917 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8951925-8955843:+
Coord C1 exon
chr7:8951925-8952257
Coord A exon
chr7:8952258-8955688
Coord C2 exon
chr7:8955689-8955843
Length
3431 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCTCCACTGTGTCTCTGCAGCTC
3' ss Score
11.44
Exon sequences
Seq C1 exon
CCCAGTGTATGAGAAGTACTGCGCAGACCACTTCGCTGACGGCCGCTGCGACCAGGGCTGCAACACGGAGGAGTGCGGCTGGGATGGCCTGGACTGTGCGGGTGAGGTGCCGGCCCTGCTGGCCCGAGGCGTCCTGGTGCTCACAGTGCTGCTGCCGCCGGAGGAGCTGCTGCGCTCCAGCGCCGACTTCCTGCAGCGGCTCAGCGGCATCCTGCGCACCTCGCTACGCTTCCGTCTGGACGAGAATGGCCAGGCCATGGTCTTCCCTTACCACCGGCCAGGGCCTGGCGCTGAATCCCGGAACCGGCGGGAGCTGGCCCCTGAGGTGATTGG
Seq A exon
GTGAGTGACTCCAGCCCCAGGGGAGCCGTGGGAGGCGCATGCAGATGCTAGGGAAGGGGCACCATTCACAAGGCCTTGTGCGTTTGCTGTGCTGTGCTTAGTCTCTCAGTCATGTCTGACTCTTTGCGATCCCATGGACTGTAGCCTGCCTGGCTCCTCTTGTCCATGGGGATTTTCCAGGCAAGAATACTGGAGTAGGTTGACATGCCCTCCTCCTGGGGATCTTCCCAACCCAGGGCTGGAACCCAGGTCTCCCGCATTGCAGGCAGATTCTTTATCAGCTGAGCTACCAGGGAAGCCCCTTGTGCGTTTTACTTCCCTTAACATCTGGGAAACACTATTCTAGCTATTTTTTAAGTTCCCTTCAAACTCTAAAACTCTGTGGCTGAACTTGGCTTTATTCCGGAAATATCTGATAAAGCACCTAATAGGTTTCAGGCACTGGGTTAGGTCTTTAGTCCAGTTATGTTTTCACTGATTTCACTGCTTAGGAAATGCCCAGCGTGTGGGAGGGCCTTCTTGGTGGTACATACAGAGTCATGTAATACATATAATACACACATCTCAGCCTCAGCACCATTGACATCTGAGGCCAGGTCATTCTTTACTGTGAGGGGCCGTCTGTCTTGTGCACTGTAGGATGTCTGGCATCTTCCCTGGCCTTTCCCCACTGGATGCAGGCAACAGATCTCCCCCCTCCCAGATGTGACAACCGGAAATGCCTCCAGACATGGGCAATGGTCCTTTGGGGAGCAGAAGAAGAGCCCCCTCCTGACCCCTGTCTGCACCCCAGGCCCTCACTGAACCCCCTGATCCTATGCGCTATGAGCTCCAATACCACCTCTGGCTCTAACTTGCCCATTTTGTTTTAATTTTTTATTTTTTAACTTATAAAGTTTATAGTGAAATAAAAGTCGCTCAGTCGTGTCTGACTTTTTGCGACCCCATGGACTATAGAGTCCATGGAATTCTCCAGGACAGAATACTGGAGTGGGTAGCCTTCCCCTTTTCCAGGGGATCTTCCCAACACAGGGATTGAACCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACCAGCTGAGCCACAAGGGAAGCATATAGGAGAGTTGTAAAATAAAAAACAAAGTTACATGTATTTCCATTATATATTATGGGCTTTCCAGGTGGTGCTAGTGGTAAAGAACCCTCTTGCCAATGCAGGAGATGTAAGAGACATGGGTTCAATCCCTGGGTCAGGAAGATCCCCTATAGAAGGGCATGTCAACCCACTCTGGTATCCTTGCTTAGAGAATTCCATGGACAGAGGAGTCTGGCGGGCTACAGTTCATTGGGGTCGCAATGAGTTGGACATGAATGAAGCCACTTAGCATGAATGTGTATATTCTGATCATTTTTAAGTAGGTAAATTATGATTTTTAGTTGGAGTTTCAGTATCAAACTCTCAAAAATTAACATAAATGGAAAATATAAAACTCTCTAGCTGGTGACCTGGTGGAGGAGCCAGAGGGAGATGTGGCTTCTGAATAGGGTAGGACCCTGACACAGAGAGGAGGGCTGGAAGTCAGAGATAAGGAGCAGGACCTCTGACTGGGATGAAGGAGGTGGGTGGATGGGTGATGTGCCAGTCCTTGGCTGGGTGACTGAGTTGCTGGAAGTGTTCTCATCAAGATGAAGAAACAACGCTTCCCTGGCAGCTTAGTGGTAAAGAATCTACCTGCCAATGCAAAGAGACATCGGTTTGATCCCTGTTTTGGGAAGCTCCCACCAGCGGTGGAGGGACTAAGCTCGTGCACCACAGCTGCTGAGCCCATGTTCCCTAGAGCCAAAGCTCTGCAACAAGAGACGTCAGCATGGTGAGAAGCCCGCACGCTGCAACTAGAGTGTAGCCCCTGCTCTCCACAACTAGAGACAAGTCCGTGGAGCAGTGAAGACTCAGCACAGCCAAAAATAAACAAGTAAAATTATTTTAAAATCTCTTTTAAAAAAGATTAAGACACCAGCTCAAAATTAAGGGTCACTTTGTGACTTGTAGAGTCTGGAGGGAACTGGGGGTCTCGGGGAGACCCTCAGGAGGCAGCTAGAGTCTGAAGAGTGAGACCGAAGCACTTGGCAATCATGGTAGCCATGGAGGGACTTGAAGAAGTAGGGAGAGTTGTGGGGAACAGAAGGATGACATGGGGACACTGAGTCCTAAAGATTGGTTGAAAGAAATTAGCTCAGAAAAGAGAAGCGGAAGGAGCAGAGACAGTAGGAGACCCAGGGCTTGGGGTACTGGGTATCCTGAAGAAGGAAAAAGTTTGGAGGGTTGCGTTCCTGGAAGCAGAGCCTGAGATTCAGATATATGCAATGTATTGAAAGGGTGCTCTGGGTAGATAGGGGATGAGAGAGGCAGGATGGGACAGGGGCAGGAACTGAGGCAGGAGGGAGCCTCAGCCAGGATCGGGCCACAGCCTGATCCCTTGGAGAGCTCTGGAGGATAAAGTTGGTCCTGCCTTGAGACAAAAGGGCCAGCTTTTGTACACATCAGTCAATCCCTGGCCTAGGGCTTCCCTAAGTGGTGTCACCTCCCAAGTGAAGGGCTCCCCACTTTGCTGAGGCCAGTTCTCTGGGGGAAGGAACAGCTGTCAACTGTTAGAAGCCAGTGCTCATAGCAGGCAGGAGATGGATACACCAGCCTGAGAAAGGAGATATTGATGGGAAAACAGTGGCCATTGGATTCATGACTTAGAGGACACTGGTGACCACAGCAAGACTGGCTTGGGAATTGACAAAGAACTTTAAGCATATGCAAAAACAGATCAGGGTTATGCACATCTAGGTACCTAGGACCAAGCATTGACAATGAACGCATAAGGCCATTCTTTATATATATATTTATATCTTTGGCTTCACTGGGTCTTAGTGGCACATGGGATCTTTGATCTTCTTTGCGGGGTCTTTAGTTGTGGCATGTGGGATCTAGTGCCCTGACCAGGAACTGAACCCAGGCCTCCTGCGCTTGGCGCTGGGAGTCTTAGCCATTGGATTATGAGGGAGGCCCCCCATATGGCCATTCCTGTTTCATATATAGTCCCTTCGATTGTCTTAGTTCCCATGCTATGTCAAAATAATTCCTAGATAGTGCGTCACTTCATATGTAGACATTTCAGCATGCTTCTCTAAACACATAAGCTCTCTTCTTAAAAGCACTGTAATACCGTGATCACAGCTAAAAAATAAATATCCTTAATATCACCAAATATATCATAAGTGGATTTAAAAAAACGATAGTTTGAAGGGATGTGGCAGGATTGGATGCCGGATGGGAGTTAGTGGTGACCTGGTGAGTAGAGATGCTCTTCTGAGCGAGGTGTGGGGAGGTGGGCGGGGCTTGGGGCGGGGCTTCTGGCAGTGCCTGCTGAGCCTCCTGTCCCTCCACTGTGTCTCTGCAG
Seq C2 exon
CTCTGTAGTGATGCTGGAGATTGACAACCGTCTGTGCCTGCAGTCACCGGAGAACGACCACTGTTTCCCTGATGCTCAGAGCGCGGCGGACTATTTGGGAGCGTTGTCGGCGGTGGAGCGCCTCGACTTCCCCTACCCACTGCGGGCGGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971:ENSBTAT00000060960:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006612=Notch=PD(82.5=29.5),PF068168=NOD=WD(100=50.9),PF076847=NODP=PU(4.6=2.7)
A:
NA
C2:
PF076847=NODP=FE(80.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]