BtaINT0102921 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8959677-8963410:+
Coord C1 exon
chr7:8959677-8959839
Coord A exon
chr7:8959840-8963105
Coord C2 exon
chr7:8963106-8963410
Length
3266 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CACACTCCTGGTCCCTGCAGATG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTGGAGGAGCCTGGTGTGGGGACTGAGGACGCTGTGGATTGCCGCCAGTGGACTCAACACCACCTGGTTGCCGCCGACATCCGCGTGGCACCAGCCATGGCCTTGACACCGCCGCAGGGCGACGCAGATGCGGATGGCATGGATGTCAACGTGCGTGGTCCAG
Seq A exon
GTCAGTGATGGTGCCCCTGCCTCCAGAATGCCCTTGATCCATCCTGCTCATGAGAGGTTCCATCTGAGTCTGTGCTCTGGGAACAGCTGGGTGTGTCTGGCTGTCTGTCAGTGGGTTAATCAGTCCTGTTAATCAGGACTCTTGGTTGTAAGTGATAATAGCCCAACTCAAGCTAACTTAAGTAAAACAAACGATTTACTGGCTCTTGTAAACAGAAGCTTCAGGCACATTTGGATCCTGGACTTGTCAGCTTTTGGTTCCAGTCCAGGCAGTCTTTCTCCTGCAGGCATTACACAACCTTTTTCTCATCTGTAACAGCAAAAGTCCCAAGATGAGGGTTTTTTTTTTTTTTTTTTAATGTAACTGATATGTTTAAATTTAATGTACACATTCTTGTTGATGCTCAAACTATTGTATCTTTGGCCAATGAAAGCTATTTATTTTTTTAAAATTTTTGGCTGCACTGGGTCTTCGTTGCAGTGTGTGGGCTCTTTGTTGCTGCTCACAGGTCTTCTCTAGTTGCAGTGCAGGAGCTTCTCGTTGCCGCGGCTTCTCCTGTTGCGGAGCACGCCTCTAGGGTACCCGGGCTCAGTAGTTGTGGCACACGGGCTTAGTTCCTCTGCAGCATGTGGGATCTTCCCAGATTAGGGATCCAACCTGGTTCCCCTGCATTGGTCCATAGATTCTTAGTCACTGGGCCACCAGGGAAGTCCTCCCAGGATGAGTTCTGATTGGATAGTCTAAGGTCACGTGCCCCATGTGTGAACCAATCAATGTGGCCTGGGGCCTGGAACATGCAGATTGACAGGCCTGGGCTATATGCCTGTCCCTGCAGCGGGGGTTTGCCTTTACCTAGGGCTTGAGAGGAGAAGGCAATGGCACCCTACTCCAGTACTCTTGCCTGGAAAACCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGATGAAGGTCAGACACGACTGAGCAACTTCACTTTCACTTTTCAGTTTCATGCATTGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGTGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACATAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGTAGCAGCAGGGCTTGAGATAGGAGAAGGCGATGGCACCCCACTCCAGTGCTCTTGCCTGAAGAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCTATGGGGTTAAGGAGAGTCGGACACGACTGAGCAACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCTTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCTGTCTCTGGGGTTGCACAAAGTTGGACACAACTGAAGTGACTTAGCAGCAGCAGCAGCAGCAGGGCTTGAGATATGCAGATGACACCACCCTTATGGCAGAAAGTCAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGATAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTGGGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGTTGTGACCAACCTAGATAGCATATTGAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCACCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGCGTGTTCTTTGGAAGGACTGATGCTAAAGCTGAAACTCCAGTGCTTTGGCCACCTCATGCGAAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGAGATTGGGGGCAGGAGGAGAAGGCTCCTTCTCCTGTGATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCGACTGAACTGAACTGAGGCCTTGAGAATGGAGAATGGGGGTGCTAGTGGCTTCCTAAGGGAAAGAAGGGCAAGTGCTCTTGCAGAGTAGAGCAGACCATGGTGTCTGAATCCTCTGGGGTCTGTCTTTGTCACATTTTATAATATGCCTCCTGCAGTTCTGATTTGCTTTCGCTCCAAATGACTCGCACCTGTGGCTGTCTTTTGACTCCCATTAGGCCCCCATGTACTTGGTATTTTATGTCCCTCGGTGCAGCTCCTAAGCAGTGGATGCAGGTATATGAAAGGCTCAGCTCCTTTGTCTCAAGCTGGATTACAACTCTGGGTACAGCTCAGCTTTCAGAGTCCCCCTTTGGGATCAGGCTGAAATGTTGTTGTTGTTCAGACTCGTGTCTGACTCTTCCCGACCCCATGGACTGCAGCACACCAGTCTTCCCTGTCCTTCACTGTCTCCCGAAGTTTGCTCAAACTCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATTCTCTGTTGCCCCCTTCTCCTCCTGCCCTCAGTCTTTCCCAACATGAGGTTCTTTTCCAGTGAATCAGCTCTTCGCATCAGGTGGTCAAAGTATTGGAGGTTAAGCTTCAGCAGCAGTCCTTCCACTGAATATTCAGGGTTGATTTCCTTTAGGATGGACTGGTTTGATCTCCTTGCTCCAGCACCATGATTCAAAAGCATCAATTCTTGGGTGCTCAGCCTTCTTCATGGTCCAACTCTCCCATCTGTACATGACTCCTGGAAAAACCATAGCTTTGACTAGATGACCTTTGTTGACAAAGTGAAATAACTCAGGCTGAAATAACTCTCCAGGAATGTGGTCATCGTCCACTTGCTTGACTTTATTCCTCCCTCGTTCTGTGTACCCTACTGCTTAGGAGGCCTCCTGCCACAAACCAAATGCCTGTGAAGCCTCATCCTGGGTTGGCTCCGAAGTACCTGACACAAGTGTGTGTGTGTGTGTGCGCGCGTGTGCGTGTGTGTGATGGGAGGATTGGCCCTTCGATCGTGTACTTCCCCACATCCCACTTCCCCCTAATGCAGTGCGCTTCCTCCTAATACATTGTCATATTCCCTGGGAAGGCCCTGTGTCTGCCTCCTTTCTGACACACTCCTGGTCCCTGCAG
Seq C2 exon
ATGGCTTCACCCCTCTAATGCTGGCCTCCTTCTGCGGGGGAGCCCTGGAGCCAATCCCAACTGAGGAGGACGAGGCAGAAGACACATCAGCCAGCATCATCTCAGACCTGATCTGCCAAGGGGCACAGCTTGGGGCTCGGACTGACCGCACTGGTGAGACGGCCCTGCACCTGGCTGCCCGCTATGCCCGGGCTGACGCGGCCAAGCGGCTGCTGGACGCTGGGGCAGACACCAATGCCCAGGACCACTCTGGCCGCACCCCCCTGCACACAGCTGTCACTGCCGATGCCCAGGGTGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971:ENSBTAT00000060960:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(83.7=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]