RnoINT0102289 @ rn6
Intron Retention
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14153160-14155821:-
Coord C1 exon
chr7:14155659-14155821
Coord A exon
chr7:14153465-14155658
Coord C2 exon
chr7:14153160-14153464
Length
2194 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CACACTACTGGTCCCTGCAGATG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTAGAGGAGCCAGGCATGGGGGCCGAGGAGCCCGTGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCCGATATCCGTGTGGCACCAGCCATGGCACTGACTCCACCTCAGGGAGATGCAGATGCCGATGGCATGGATGTCAACGTACGAGGGCCTG
Seq A exon
GTGAGTGTCCCTCCCCAGAGAGGCCCTCACTGGTCCTACCTGCGAGTTCACGAGGTCATGTGTGGGGACTCTGGGAGCGTCTGGGCTTCTGTACCTGGTGTGTGTATGAAGCCAGACTTTAGGTTGTAAAACAGATTATAAGCTGGCATGTAACGGAAACATTGAGGATATTTGGATCCTGGACTTCTTCTTTTATGAGATTAAGATTTCCATCTTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCTCCTCCTCCTCCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTGCTTTTTGTTTTTCAAGACAGGGTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTACTTCTGCCTCTTGAGTGCTGGGATTAAAGGCATGAGCCACCACTGCGTAGCTACTAAAAATATTCAAGTTAATGTTTGCTGAATTCTTCTGTCTACCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTGTTTGAACAGGGTTTTTTTAAGTAGCCCTGAATGTCCTAGAACTAGTTCTGTAGACCAGGCTGGCCTCGAACTGAGATAGTTTTGATAGAAAAAGAATATTTTATAATGACATTTAAGCAACACTGGTTACACTGATATTTTAGGAGAATGTTTGATGCCATTCCCAGAATATTCATGCAATGAATAATTTTATAAAAATATAAAGCACAAGAAAAAGAAATAAACACAACAATTTTGAGTGAGAAAAAAGTGGAACAATTTTTCTAGAATAAAAAACAAAAACTATAAAACTATTCTTACTAAGGCAGTATAGTCTTGACAGAGATAGACAAGTAGCTTAGTGGAATAAATTATCAATACAGCTCCAGACTATATAAACTTACTATATATGGGAATATATTACTATATTAAAGGGAATCAGCATAATCAGGAAGGAAAGTGTGTGTGTGTATGTGTGTGTAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACTCCCCTCCGTCCCACCCACACTCCCCTCCGCCCCACCCACACTCCCCTCCGCCCCACCCACACTCCCCCTCTGCCCCACCCACACTCCCCCTCTGCCCCACCCACACTCCCCCTCTGCCCCACCCACACTTCCCCTCCACCCCACCCACACTCCCCCTCCGCCCCACTCCAACCTCCTTAGCTTTAACCAAACAGCATGTCAGGAAAATCTCCGAATAATTCTGACAGGGTGGACTAGAACCATACACACACTCTTGGGCCAATCAACGTAGCTAGGGCCTGTAGCATGCAGATAAATCAGTCCTTGTCTGGTCTAAGTAGGCTTGCTACTCCGGACTGTGGGAGCAAGAAAACTAGGGAAAAGGTGGTGCCCTTCCCCTTTACTCTAAGTGCTCTGCTTCCTGGGATTGCTTTTGCAATAAATGATGCTCTTTGTGGGGTGGCTTTGCAGTTGGGAGAATTTACCTCTGTCTCGTGGTGCTCTGTGTCCCAGTCGCATCTAGTACAGTGCCCCTGACATTTGCTCCGGCAAGACCCCTATGCCTGTGACACACTACTGGTCCCTGCAG
Seq C2 exon
ATGGCTTCACCCCACTTATGCTGGCCTCGTTCTGTGGGGGAGCCCTGGAGCCGATGCCAGCTGAGGAGGATGAGGCCGATGACACGTCAGCCAGCATTATATCAGATCTGATCTGCCAAGGAGCCCAGCTCGGGGCACGAACTGACCGAACTGGCGAGACCGCCCTGCATTTGGCCGCCCGATATGCTCGAGCCGATGCGGCCAAGCGGCTACTGGATGCTGGGGCAGACACCAACGCCCAGGATCATTCTGGCCGCACCCCTCTGCACACCGCAGTGACAGCTGATGCCCAGGGTGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346:ENSRNOT00000037456:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(83.5=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]