BtaINT0102947 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26994557-26995487:+
Coord C1 exon
chr23:26994557-26994732
Coord A exon
chr23:26994733-26995267
Coord C2 exon
chr23:26995268-26995487
Length
535 bp
Sequences
Splice sites
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
3' ss Seq
TTCTGTGTCTCTTCCACCAGAGC
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTTTGTGGTGGTGATGGGTGTGGACTTGTCCCACTGTGGCCCCGAGCGCCCTGCATCCCGCTGCCCCTGGGACCCTGGGCTCCTACTCCGCTTCCTTGCTGCAATGGCTGCAGTGGGGGCCCTGGAACCCCTACTGCCAGGACCCCTGCTGGCTGCCCACCCTCGTGCAGGCACCA
Seq A exon
GTAGGTGATCCCGTCATTTCCCCAATTTTGTTCCCGGGCCAGCTTTCATGCCAGCAACCTCAACGAAGTCAAATGAAACAGAAGCACTGAGACCCCAAATGTTGTTTGTGGAGACTTACCCTTGTTAACCTTCTTCTCTAAGTATATCTCCTCACAACCCATTTGCTCTGCAAGCTCCATCTCCCTGAGTCTTTTATCCTAACCTCTATCATAGACCGCCCACAAACCTTGAGTTCTGGCCTATTCTCTCTAATAAGCCAAGAGTTATCCAATCATCTGCAAATCAAACAGTTCATAGCATTATGGAAGAATAACAACTCTTATATGCCACTTACTATGTGCCAGGCCTTGCTCTAAGCATTTTATAGTATTATTTAATCCTCCCAACAAACCCTATGAGGCAAGTACTATTATTACTCCTATTTTACAGTTGAGGAAACTGAGGCAAAAAAAGGCATCTGAACTTGCTCAAAGGTCTCACCAGAGTACCCAGCCTCACCAGGCATGGCCTCTTTTTCTGTGTCTCTTCCACCAG
Seq C2 exon
AGCCCTCCGCCAACCAGCTTCCCTGGCCTGTACTGTGCTCCCCAGTGGTCGGGGTCCTTCTCCTAGCCCTCGGGGCTCTTCTCGTCCTCCAGCTCATCCGTCGCAAGCGCCGAGAGCATGGGGCCCTCTGGCTGCCCCCTGGGTTCACTCGCAGGCCCCGGACTCAGCCAGTTTCCCGCCGACGTCGACCCCCGCTGGGCGAGGACAGCATCGGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(90.8=100)
A:
NA
C2:
PF076847=NODP=PD(3.1=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGTGGTGATGGGTGTG
R:
GCGGGAAACTGGCTGAGTC
Band lengths:
354-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]