BtaEX6098180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26994557-26995759:+
Coord C1 exon
chr23:26994557-26994732
Coord A exon
chr23:26995268-26995487
Coord C2 exon
chr23:26995678-26995759
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTCTCTTCCACCAGAGC
3' ss Score
10.06
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTTTGTGGTGGTGATGGGTGTGGACTTGTCCCACTGTGGCCCCGAGCGCCCTGCATCCCGCTGCCCCTGGGACCCTGGGCTCCTACTCCGCTTCCTTGCTGCAATGGCTGCAGTGGGGGCCCTGGAACCCCTACTGCCAGGACCCCTGCTGGCTGCCCACCCTCGTGCAGGCACCA
Seq A exon
AGCCCTCCGCCAACCAGCTTCCCTGGCCTGTACTGTGCTCCCCAGTGGTCGGGGTCCTTCTCCTAGCCCTCGGGGCTCTTCTCGTCCTCCAGCTCATCCGTCGCAAGCGCCGAGAGCATGGGGCCCTCTGGCTGCCCCCTGGGTTCACTCGCAGGCCCCGGACTCAGCCAGTTTCCCGCCGACGTCGACCCCCGCTGGGCGAGGACAGCATCGGCCTCAA
Seq C2 exon
GGCACTGAAAGCAGAGGCAGACATGGATGAGGATGGTGTTGTGATGTGCTCAGTCCCCAAGGAAGGAGAGGAGGTGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'24-31,'24-30,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.473 C2=0.750
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(90.8=100)
A:
PF076847=NODP=PD(3.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGTGGTGATGGGTGTG
R:
CCACCTCCTCTCCTTCCTTGG
Band lengths:
252-472
Functional annotations
There are 1 annotated functions for this event
PMID: 16530045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: inferred by author. ELM ID: ELMI002960; ELM sequence: LWLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]