RnoEX6061533 @ rn6
Exon Skipping
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4349391-4350369:+
Coord C1 exon
chr20:4349391-4349566
Coord A exon
chr20:4349944-4350163
Coord C2 exon
chr20:4350300-4350369
Length
220 bp
Sequences
Splice sites
3' ss Seq
GACTGACTCTCTCCTACCAGGGT
3' ss Score
8.83
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTTTGTGGTAGTGATGGGAGTGGATTTGTCCCGCTGTGGTCCAGAGCATCCTGCGTCCCGCTGTCCCCGGGACTCTGGGCTCCTGCTGCGTTTCCTTGCAGCAATGGCCGCAGTGGGAGCTCTGGAGCCCCTGCTGCCTGGACCCTTGCTGGCTGCTCACCCTCAAGCAGGGACCG
Seq A exon
GGTCCCCCGCCACCCGGCTTCCCTGGCCCATTCTGTGTTCGCCAGTGGTCGGGGTGCTCCTCCTGGCCCTTGGGGCTCTTCTCGTCCTCCAGCTCATCCGGCGCCGGCGGCGGGAACACGGGGCCCTGTGGCTGCCCCCTGGTTTCATTCGAAGGCCACAGACACAGCAGGCACCCCACCGGCGGAGGCCCCCACTGGGCGAGGACAACATTGGTCTCAA
Seq C2 exon
GGCGCTGAAGCCAGAGGCAGAAGTGGATGAGGACGGAGTGGTCATGTGCTCGGGCCCTGAAGAGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442-'26-37,'26-34,27-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.311 C2=0.750
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(92.2=100)
A:
PF076847=NODP=PD(3.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAGTGATGGGAGTGGA
R:
CTCTTCAGGGCCCGAGCA
Band lengths:
237-457
Functional annotations
There are 1 annotated functions for this event
PMID: 16530045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: inferred by author. ELM ID: ELMI002960; ELM sequence: LWLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]