RnoEX0002722 @ rn6
Exon Skipping
Gene
ENSRNOG00000048929 | AABR07044389.1
Description
NA
Coordinates
chr20:4317440-4510524:-
Coord C1 exon
chr20:4510429-4510524
Coord A exon
chr20:4510034-4510173
Coord C2 exon
chr20:4317440-4318342
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACATCAACCCTGGTTCTAGGTC
3' ss Score
6.36
5' ss Seq
CACGTGAGA
5' ss Score
5.23
Exon sequences
Seq C1 exon
AAGGAGCTTCAAGATCGGGGAGAGATCCAAGTCATCCAGCTAGGCTTTGACTTGGATGCCCACGGAATTGTCTTCACTGAAGACTACAGGACCAGG
Seq A exon
GTCCTCAAGGCCTGCGATGGCCGACCATGCGCTGGGGCGGTGCAGAAGTTCCTGGCCTCGGTGCTCCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAGATGACACAGACTTACGGCTTCAGGGACTCGGAGATCAC
Seq C2 exon
GCACCTGGTGAATGCTGGAGTCCTCACTGTCCGTGATGCTGGAAGCTGGTGGCTGGCTGTGCCCGGAGCTGGGAGATTCATTAAGTGCTTTGTTAAAGGTAAGGTACCCCAGGTTGAACAACGCCCTTTGGAGGGGGTTTTTAGGGGTGTCCTTAGGTCTCCATGTTTGACTCACCTCTTCCTTTTCCTGGATCCTCTCCTCCAGGACGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTCCCCTGTCGGAGCTCCTGGGCTGCAGGGCCCCTTCAGCAGTGCGGCTAGGTCTTGCCTACCATGTGCATGACCTCATTGGGGCACAGCTGGTGGACTGGTGAGTCTAGTCCTGAGACCTGGGAAACTGCAGGGACCAGGGTTGGCTTCCCTAAGTCATGCTTCAGTGAAGCCCAGTTTCTCTCAGTCTTTGTGGTGAGTTCCACAACACTGTACTAAATTCTGAGTATTTTTCACCCTCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048929-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- RnoALTA0000627-1/2
- RnoALTA0000627-2/2
- RnoALTA0010986-1/2
- RnoALTA0010986-2/2
- RnoALTA0013347-1/7
- RnoALTA0013347-2/7
- RnoALTA0013347-7/7
- RnoALTD0000534-2/4
- RnoALTD0000534-4/4
- RnoALTD0002207-1/3
- RnoALTD0002207-2/3
- RnoALTD0002207-3/3
- RnoALTD0023375-1/3
- RnoALTD0023375-2/3
- RnoALTD0023375-3/3
- RnoEX0002718
- RnoEX0002719
- RnoEX0002720
- RnoEX0007823
- RnoEX0060488
- RnoEX0060489
- RnoEX0069237
- RnoEX0070309
- RnoEX6061533
- RnoINT0004969
- RnoINT0004970
- RnoINT0004971
- RnoINT0004972
- RnoINT0015051
- RnoINT0015053
- RnoINT0015054
- RnoINT0015055
- RnoINT0015058
- RnoINT0015059
- RnoINT0015060
- RnoINT0053397
- RnoINT0053403
- RnoINT0067142
- RnoINT0102307
- RnoINT0102309
- RnoINT0102310
- RnoINT0102312
- RnoINT0102313
- RnoINT0102315
- RnoINT0102317
- RnoINT0102318
- RnoINT0102319
- RnoINT0102320
- RnoINT0107832
- RnoINT0116858
- RnoINT0118639
- RnoINT0118640
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTTCAAGATCGGGGA
R:
ACCCCTAAAAACCCCCTCCAA
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]