RnoEX0060488 @ rn6
Exon Skipping
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4329811-4331231:+
Coord C1 exon
chr20:4329811-4330020
Coord A exon
chr20:4330762-4330843
Coord C2 exon
chr20:4330936-4331231
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCATCTGGTCTCTTCTTCAGAGC
3' ss Score
9.63
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GAAACAGCTCAGACTGAGGCGTGCAGCAGGCCCAGGAGGAAGAAGGGCGGTAGAGGCAGAGGAGGTGGCCTTGCCTGGCCACAAACGCTCTGAGGGTCCTTGCCTGGAGAGGGAGAGGAGACCGAGCCAGGGACAGGCGCTCTGGGATGCAGCGCCAGTGGCTGCTGCTTCTGCTCTTGCCGCTCAGCTTCCCAGTCATCCTGACCAGAG
Seq A exon
AGCTTCTGTGTGGAGGATCCCCAGAGCCCTGTGCCAACGGAGGCACCTGCCTGAGGCTATCTCAGGGACAAGGGACCTGCCA
Seq C2 exon
GTGTGCCCCTGGATTTCTGGGTGAGACTTGCCAGTTCCCTGACCCCTGCTGGGACACCCAACTCTGCGAGAACGGTGGCAGCTGTCAAGCCTTGCTCCCCACAGCCCCAAGCTCCCACAGCCCCACTTCTCCACTGACCCCCCACTTCTCCTGCACCTGCCCCTCTGGCTTCACTGGTGATCGATGCCAAAGCCCTCTGGAAGAGCTCTGTCCGCCTTCTTTCTGTTCCAACGGGGGTCACTGCTCTGTCCAGGTCTCGGGCCGCCCACAGTGTTCCTGCGAGCCCGGGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=PU(67.7=75.0)
C2:
PF0000822=EGF=PD(29.0=9.0),PF0000822=EGF=WD(100=46.0),PF0000822=EGF=PU(90.6=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACGCTCTGAGGGTCCTT
R:
GAACTGGCAAGTCTCACCCAG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]