BtaEX6098200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26973191-26974597:+
Coord C1 exon
chr23:26973191-26973257
Coord A exon
chr23:26974041-26974122
Coord C2 exon
chr23:26974305-26974597
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACCCTCATCTCCATCCCTAGGGC
3' ss Score
10.74
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATGCAGCCCCCTTCACTGCTGCTGCCACTGCTGCTGCTGCTGTGTCAGCCAGTCGTCAGGACCAGAG
Seq A exon
GGCTGCAGTGCGGGAGTTTCCCAGAACCCTGTGCCAACGGAGGCACCTGCCTGAGCCTATCCCAGGGGCAAGGGACCTGCCA
Seq C2 exon
GTGTGCCCCTGGCTTCCTGGGTGAGACATGCCAGTTTCCTGACCCCTGCCAGGATGCCCAGCCCTGCCAGAACGGAGGCAGCTGCCACACCTTTCTTCCCACCCTTCCCGGCTCCCCTGGCACCCCCTCTCCCATGGCCCCCAGCTTCTTCTGCACCTGCCCCTCTGGCTTCACTGGCGATAGGTGCCAGGCCCAGATCAGGGACCCCTGTTCCTCCTTCTGTTCCAAAATGGGTCGCTGCCACCTCCAGGACTCGGGCCGCCCACGATGCTCCTGCATGCCAGGATGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=PU(70.6=85.7)
C2:
PF0000822=EGF=PD(26.5=9.1),PF0000822=EGF=WD(100=46.5),PF126612=hEGF=PU(69.2=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACTGCTGCTGCCAC
R:
GGGAAGGGTGGGAAGAAAGGT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]