RnoINT0004969 @ rn6
Intron Retention
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4443727-4444279:+
Coord C1 exon
chr20:4443727-4443883
Coord A exon
chr20:4443884-4444015
Coord C2 exon
chr20:4444016-4444279
Length
132 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGA
5' ss Score
3.73
3' ss Seq
CTTCTGTCTGACCCCGCTAGTGA
3' ss Score
5.13
Exon sequences
Seq C1 exon
ACTGAGGGGGTGAGCCCACCATTCACAGCTCGGGTGCCCAGCTCTGCCTCGGCCTATGACCAGCGAGGACTGGCGCCCGGTCAGGACTACCAGGTCACTGTCCGGGCTCTACGAGGGACCAGCTGGGGTCCTCCTACCTCTAAGACCATCACTACCA
Seq A exon
GTGAGAGCCGGGGCTGTGGGGACAAGATTTCTGGATTTGACAGGCTGCTGGCAATCGGCGTGGGGTGGGGTCTATACCAGAGCAGAGCAGAGAGGATTCGCTCCTGAGCCCTCTTCTGTCTGACCCCGCTAG
Seq C2 exon
TGATCGATGGTCCTCAGGACCTCCAAGTGGTAGCTGTGACCCCGACCACACTGGATCTCAGCTGGCTGCGCCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTATGTCAGTGCTGGCAACCAAAGGGTGCGACTGGAAGTTCCTCCTGAGGCAGACAGAACTCAACTAACTGACCTGATGCCAGGTGTGGAGTACGTGGTGACTGTCACTGCAGAAAGAGGCCATGCTGTCAGCTACCCAGCTTCTGTCAGGGCGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581:ENSRNOT00000077635:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGGTCCTCCTACCTCTA
R:
ACAGTCACCACGTACTCCACA
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]