BtaINT0150627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106024361-106028373:-
Coord C1 exon
chr8:106028217-106028373
Coord A exon
chr8:106024631-106028216
Coord C2 exon
chr8:106024361-106024630
Length
3586 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GTCTCCTCTGCCTGTCACAGGCT
3' ss Score
8.21
Exon sequences
Seq C1 exon
AATAAAGACGATGAGGAAGAGATCACCAAGAGCCTGCGGAGGCCGGAGACCACGTACCGGCAAACTGGCCTGGCTCCCGGGCAGGAGTATGAGATATCCTTGCACATTGTGAAAAACAATACCCGGGGCCCTGGCCTGAAGAGAGTGACAACTACCC
Seq A exon
GTGAGTATTACCTTTAATACCACTGTAAAGCTTATTGGACTGCAAAGCACCTCTAGTTGATAGCATGCTCTCTTACAGAGCTGCTGCTAAGTCACTTCAGTTGTGTCCAACTCTGTGCGACCCCACAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGACTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTATCTGACTCTTAGCAACCCCATGGACTGCAGCCCACCAGTCTCCTCCATCCATGCGATTTTCCAGGCAAGAGTACTGGAATAGGGTGCCATCGCCTTCTCTGCTCTTACAGAGCAGCAGTGTCAATTCACTTTTGCTACCTAAAAAACAAACTCCAAACTTAGTAGCTTAAAACGATTGCACGTTTGTGATCAGGGGTTGGACAATCTTCCTCTTCTCCACTGGACTCACTTAAAGCATCTGTGTGGGCTGGTTGACCTGGGATGGCCTCAGCCAGGATGGTGTCCTTCTGCCCCACACAGTCCCCCAGCCTCCCACAGGCTAGCCTGGACCTGGCCTCACAGCAGCTGAGCAAGTTCACAACCAGCACTGGGTCACTTCCACCAAAGCCAATCTCAGGGCCAGTCCAGATGGAAAGGGTGGGGAAACAGACCCATCTCTTTACGAGAGACGCTTCAGTGTGACATTTCAAAGGGGGCGCTGATACAGGAAAATACCGGAGATTCTAGTAAATGAGCCACCACACTATCCGATTTAATATTAGTAACCAGTCTTAATGAAAGAGGTAGGGCAAATATTAATGCTGTTCTTATTCAAGAGTAGAAACTGAGGCTTAGGGAAGCGGAATCAGTTTGACTAACACCATGTGGTTAATCCTATAAGGGCAAGAATTTTTAAGCCCGGGTTTAGTTTTATGACTTTAACCCCATTACCAATAACACTGACTAGCCTCTGGGTTATATAGTGTTAATTCTTCAACAGGAACCCAAATAAAATGTAGCTCAGCACTAAAGATGCCAGAACTGCTTGGGGGTCAATGTGGCACTGTTAGATCGTTTGGTGGGCGGACTAAAAATCCTGAATTTGGAATTGTTCTACAGAGAAGCAAAATTTTATAAATAAATAAATAAAATTATTCTGTGCTGACATTTGGGAAAATCTCTTTATCTTCTTCAAGATAACACGTATGCCAACTGCTTAAGGAATTGACTCTTCTTGGCAGGGAGTGATTGGAAAATTTACATCTGTTGACTAATGACAAGAAAGAACATCTTGCATTTAAATATTTGCACATTTTGCTTAACTCAGATCCAACAATTCAATTCATAAGACTGTCTTTTTTTATAAGCAAGTGTTTTCCATCATCTTGACAACATCCCACTGTGGTAGGTAGAAGACGGGCACCAACAAGAAAAAACATCATTAGATCACCAGAAAGGCAGAGAAAAGATCAAACACAGAGACAGCACACTGAAACACAAAAGGCGTTTCTTTCATCTGCCCTTTGCTTTTTAATCTGAATTTGGGGACTGGTTGCTTTATTTTCTTCTTCTTGCAGGACAAACACCCCAACATCTGACGTTTCATAATCACATTAATACTAACACTGAGAGGCAGATTCTTACCTGTTTATTTTGCTGATACCTGGTCTTTTTCCAAATTTAAAGAAAGGATCTTAATGTTTTCATTTTCAGCTCCTTCCCTCTCGGCTCTATACAGAGATTGTATAACAACCATTTCTGATGTGTAAATGTTTTTGAAAGGCATTGACATTTAAGGAGAAGGAACATGGGTTTTGGATCCAAACAGTCCTGAGTTTGAATTCTAGCTTCAGCACTCACCACCACTTTAGGCACATTCACTTCTTTAAGCCTCAGACTCACCATCTGGAAACTGGGTTCATAGTATCTTCCTATGGCATAGTCATGAGAGTTAAGACTTAAAGTAACAAAGCACTGTGATTGGCACACAGTACCTCAAGACCATGTTAACCTCCTGGATTGAAGGGATCCCAAGCTAGGAGAAGATCAGCGTCCTTAATTGAATCTCTGTTTCTTTAATGAAAGGGCTGTTAAGAAAGACAGTAGGTATGGCTTGGGTGTTTCCCAGCACCTCAAAGAACATAGAACACGCGCTTCACTGCTGAATTGCAGCATCGGTTTCACTATGCACTTTATACTTTCATCGTCTGTGAGCTGAGACTTACGTATCAACGCCTAGGGTTCAAAAAATAGACACTGCAGGTTTCTCACAATCGACTCTGAATTATTCCTTCTCATGCCTTTTATAAAACCGAGTCCCCTTCACTCAATATTGTTATCTCATGAATGCTGAAAACACAAACCTAACTATGTTTAAAAAAATGAAGAAAGAAACATTGACTGGATGCCTTAATGTCTTAATTTTATGCTTGGTATGTTTTAATGCATTAAAATTTTTACATAATTAGAAAAAAGTTAAAACATAGATGACAAAGCCTGATGGTATGCTGTGGATTCAGAAAGGTCAAAGACCCACTCTCTAAATGAATGAATGACTATATAGATGGCATGATGCAGTTTGAATAAACTGTAGAGAAATCTGTTTTGGAATAGTTAGAAAAGTACAGTATTCAAAAGCTCTTCTTTTTTATTTTGGTAAGAACACTAATCCTGAGCTCTATCCTCTTAATCCTGATGCTGGGAAAAATTGAGGGCAAGAGTAGAAGGGGATGACAGAGGATGAGATGGTCAGATGGCATCACTGACTCAATGGAAACACGCTTCAAGAGTGTAATACAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTCAGAGGCATCAATGCACTCTTGGAGGAGAGGTACGCTGTCGGAGCAGGAAGCACAAGGCCTTTGGGGCAGGAGGAAGACCGAGATGAGGACTTGGAGACTGACAAGGCTTGAGATAGCCATGACCTTCTTGCTTTAGTTATTTCCATCAAAGCTAACTTTCCATACATTATCAAGATAGTCATTGCCTCAGTTTTCTGCTCCATTATTCTGATAGAGAAGTCACCAATTAGGGAGTTTTGTCTCACTGGAAAACCAGAGAGACTGAGTCAATGTTTTTCAAGTGAAACACCTGCTGTGTGTTTCTTAAACTTATGATAATGATGATAGTCATAATAATAACAATAATCATGACTATTTATCATATAACTACTATGTAGCAGGCTCTGTGCTAGATGCTTGGCATGCATTATTTCCATTAACATTTGAAAAACCAAACAAAAAAAACCCTACCAGTTAGCAGTCATCCTCTGTGCTTAGTGCCGCAGAGACTCCGATGATACTTATAGCTTATCAGATGGGAAACTGAGATTCCAAAAGACAAAATAAGTCAACTGGCCAGCATACAGCTAAATGTACACTCATGCACTTGGAAGACTGCAAGCCCCCTCTCTGCTCAGCCCTTGGCACTGGCCCTGGTCTCTAAAACTGCTGTCTCCTCTGCCTGTCACAG
Seq C2 exon
GCTTGGACGCCCCCAGCCAGATTGAAGTGAAAGATGTCACAGACACCACCGCTCTGATCACTTGGTCCAAGCCCCTGGCCGAGATCGATAGCATCGAGCTCATGTACGGGATCAAAGACGTGCCAGGAGATCGTACCAGCATCGATCTCACACACGAGGAGAACCAGTACTCCATTGGGAACTTGAAGCCGGACACCGAGTACGAGGTGGCCCTCATCTCCCGCAGGGCCGACATGTCCAGCAACCCCGCCAAAGAGACCTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575:ENSBTAT00000000752:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
NA
C2:
PF0004116=fn3=WD(100=89.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]