RnoINT0153602 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79839333-79843133:-
Coord C1 exon
chr5:79842977-79843133
Coord A exon
chr5:79839603-79842976
Coord C2 exon
chr5:79839333-79839602
Length
3374 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CTTCTTTTTGTTGGTCACAGGCC
3' ss Score
9.2
Exon sequences
Seq C1 exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGCTTGAGGAGGCCAGAGACCTCCTACCGCCAAACTGGCCTGGCTCCTGGCCAAGAATATGAAATATCTCTTCACATTGTGAAAAACAACACCCGAGGCCCTGGCTTGAAGAAAGTGACCACAACTC
Seq A exon
GTGAGTAGCAGCCAACACCTGTGATAGACCTAATTGTGTCTCTTTGCACCGTCTGGTTTATAGCACGCCCTCTGACACAGCATCTGTATCAGTGAGAGTTTGCTTACTTATACAAAGTCCATATGCAGTGCCTTCAGTGAGAATTCTGCAGGTTTGTGATTTGGACTTGGGCTCAGCTATGTGAGGATTGTCCTTGACTGGGGTCACTTGGGCCTCTTTTGTGAACAGACTGCTTGGCCTAGAATGGCCCCAGTCAAGAAAGTCACCTGTAATCCTTGCACTCTAGAAGCTGAGACGGAAGTATTAGCATGAGTCAAGGCCATGAGTCCTGGGCTCTGTAGTGAATTCTAGGATAATATAAGCTATGCAAGGAGACACTGTCTCAATAAAATGAAAGCAAAGCATAACCGGATGGCGATTTTCTATCTGTGGGACCTCATCATCGGCCTGGGCCTGGTGGCATGGCTATTGAGTAGACTCATAACTGACATTTCCATCACTGCTGTCGGAGCAAATTCTCAGGCCAGGTCCCATGGGAGAGACAGAGAAACAGATGTGTCCCCTCCCTGAAGTTTCTCAAAGGCACATGCTCAGGATGGTAGATGTAGAAAAAGTAATCATGGAAGCTATCACAAGTCATCTACCACATCGGCTCATATCATACTAACACCAAGTCTCCCATGACAGAGACCAGGTGTATATGCATGGTACTGTGTGTAAAGACTAATGAATAAGCCTTGGAGAAATTGAGTCACTTTAACATAATGTAGTCCAGACAGTCCTGGTCATGACTCTACGCACAGCTGAGGAATGGAGAAAAGGGGATCCCAAGGCTTGCTGGCCAGGTCAAGGCTAGCCAGAGACCCGGGCTCAAGGAGTAATGTGGGCAGTCCAAGAATGATGCCTAAGGTTGACCTCTGACCTACAGATACACTCACATATACATACACTCACACACAACCTTTTGCACATATACATATATCCAAACACACACTCTCATACATGCACACATAAATGTATACTCACATATAAATGCATGCTCACGTACACACTCACACATGCTGTTCCAGCCACACACACCCACACACAAACACATACAACTTTCAAAAACCCACACACACTCAACAAAGTCTCATACACACTTTCAAACACAAACAGACATACTCATACACCTTTCACTTGACACTAATATCCTTAGCAATTCTCAGGGTAGAGTAGGATTTAATAAGCTAGCGAATTCTGTGGGATATAACTGAACTTAGAATTGTCCTAACATCAAATATTTTTACAAAACAAGATACTGTAGAATTGGAGCAAGTGATTCTACATTGGCCTTTAGTAGAGAAATGTCTTATTTTCTTCAAGAGAACAGATGTGCCGGCTCTTTAAGAAGTCAACTCTTGCTGGCAGGGGCTTGCTGGGAAAGTTGGATCTATTGACACATGACAAGAAGGAACATCTTGCACTTAGATGCTTGCACAGTTTGCATAGCTTAGGGCCAGTACGTAGGACTGTCTCCTTCATAAGCAAATGTTTTCCATCATCCTGACAACAGCACTCTGTGGTAGGTGTGAGGCAGGTACTGACAGGAAAAATCATTAGATCACCAGTAATGCAGAGAAAAGATCAAGGAAATGCTTATTCACTGTAGGCAAAGCACACTGAAGAGAAAATGACATTTCTTTACTTGCTCTTTGCTCTTTTATTCAAATTACTTGAGGCTTGGCCTCTTTGTATTCTGCTTATTAAGAGATAAACACCCAGCCTCTGAAGGGCCATAGTGTGTAAATACCAACATTGATGGATGCACGCTTTGCTGTTCCTTTTGTGACTATTTCTGAGAATTTTTGCAGAATCCAAGGACCTTAGCTTTTTGGTGCAAAACATGTTTGATTCCTCCTCTCTGGCACCTCATCAAGGTTTATTGTGCTCATTCTAGACACTTAAATGATGACAAGATTCATCATTCTATGATGGTGAAAGGGTGTGGTAGTCCTGGGTTTAAATCCCTTCTTTGCCATTCTCTACAACTTTGGAATATCCTACTTCTTTAAGGCTTGGTTCCAACGTTTGGGAAACTGGGTCCATAGCATCTTTCTCACCAAGTTGTCTTAAGCCAAGGCACAGATGACACAATACCATGGGATGTGATCAGTAGAGAGAGTAATGTCAGTCTTTACCATTCAAGGAATGCAAAGTCGGGGCTACCAGTATCCCTGACCACACCCCAACCTCCTTGGCAGTTTAAGTGGCTTTATGGCTGTGAGAATGTAAGGCAGTGTCACTGTTCAGGAAATAGCATCATTTTCATGATGCATTTCGTGGATTCATTAAATACAAACTGATACATAACCACTTAGACTTTAAAAATGGACCACGAAGCATCCCACAATCTATCCGAAAAAAAAAATGGTCCTTTTTCCATACTCTGCACGAATCCCAGCTACTTCCCTTTAAAAGCACTTACTGGACAGATGCTGAAGGCATAGACTTTTAAAGATAAAAACATATTAAATGTTCAGGATGACCTGAGGAGCTTGAAGGCCAAACATTTATTTTGTGAATAGATGAATGAATAAATGACCCATTGTAACCTGTAAAGGTTCATGACTTGCCAAAGAATGACACCCAGACCCAAACAGTATGTAAAGCAAAGAGTGTTTTATTCTGCAGAAGTCCAGCATGCTGGGGTCTCCCATTACCAGAATAGAGAGACAACCAAGTTAGCTTGCAGGCTCAATTTAAAACACAGTGGACTTCTGGGAAAGATGAGCTTTATCTCACTCTATCTCTAGGCATTCCAGAACCATTATGGGGCATGAAGAGTGGAGTCTGTGGGGGTTTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTGGTGTTTGTTTGTTTGTTTGTTTCCTCTTAGTAAATTACTTGCCCAGGCTTGCCCAGACTTGCCCAATTCTTAGCTTAACTGACAATTTGAAGCCTGTCATGGAATCTCCCTAGCCTTCACAAACAAACTATAAAAACATCTGTGACAAGATCATGAGACAAGTGTTCTGTCACAAAACTCTCTCAGGGCAGCAGCAGCTACAGGGAGGAGGATGTATGTACCTGTTTGACATGAAAGGCTTAGAGGAGAAGGGAAATCTCAGTAGATGAAGCAAAGGAATAGGCTTGTACCGACCAGGAGGTAAGGAAGTGTGAAATCCAGGTGTATGGGGCAGGAAGTGAGTTTAACAGGATGACACAGGGACTCCCAGAATGAAAACAAAACAAGCAGTGTGCTTGAAACAGAAATGACTCTAGTCTTACCTCTTTTGTCAAAAACTACTTTGAGGCTGATCCCTTCTGCTGGCCTTGACCCTTTTCTCTTCTTTTTGTTGGTCACAG
Seq C2 exon
GCCTGGATGCCCCCAGCCAAATTGAGGTGAGAGACATCACAGACACTACAGCACTGATCACCTGGTCCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTGCCTGGAGACCGGACCACCATCGACCTCACACATGAAGACAACCAGTACTCCATCGGGAACCTGAAACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAGGAGACCTTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=NA C2=0.363
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
NA
C2:
PF0004116=fn3=WD(100=89.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]