HsaINT0169930 @ hg38
Intron Retention
Gene
ENSG00000041982 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr9:115077943-115081928:-
Coord C1 exon
chr9:115081772-115081928
Coord A exon
chr9:115078213-115081771
Coord C2 exon
chr9:115077943-115078212
Length
3559 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTGTCCTCTGCCCATCATAGGCT
3' ss Score
8.45
Exon sequences
Seq C1 exon
AATAAAGAAGATGAGGGAGAGATCACCAAAAGCCTGAGGAGGCCAGAGACCTCTTACCGGCAAACTGGTCTAGCTCCTGGGCAAGAGTATGAGATATCTCTGCACATAGTGAAAAACAATACCCGGGGCCCTGGCCTGAAGAGGGTGACCACCACAC
Seq A exon
GTGAGTATCACCTTTAATACTTATAGAATGATAAGGCTGATTGTACCTCATAGCACCTCCTGGTTGAGAAAGTGCCTTCTCATATAGCATCTACATCATTTAACTTTTGCTGCATTTTTAAAAATCCAGATACAGTGGTTTAAAATAACAATTCTTTGCATGTTGGTGATTTGGGTTTGGGCTCAGCTGAGCAGCTTATCTGTTCTTGACTGCACTCCTCATGTATCTGTGTGCTTAAGGGGTGGATTGGCCTAGGATGGCCTCAGCCAGGATGGTGTCTTTCTGTTTCGCAGAGCCTCTCATTCTCCAGGATGCTGGTCCTGTTCACACAGCTATTGAACAGGTTCAAAATTGGCATTAGATCACTTCTATCAAAGCACATCCCACGGCCAGTTTATATTTAAGGAATAGAGAAACAGATCCATCTCTTGATGAAAGGAGTTTCAAAATCTCCTTTCAAAGGGGTGTGACTACCTGAAGATAATTAAGCCCATTGCTAACAATCTAATTAGCATCATGTCACTAGTTTAATATTAGCACCCAGTTGTAGGACAGAGGAAGGGAAAATATTAATGTTAAGGCTTAAAGAAGCTAAATCACTTTAACATCCCATAGTTAACACCATCAGGGGCATAACTTTAAGCCAGGGTAAGTTTTATAACTTTAACCCCATTTCCACTAACATTGACTAGGCTCTGGTTTATGTAGAATGTTGATTCCATCTCTTCAATGGGAACCTAAATAAAATTTCATTCAATACTAATGATGTCAGAAGTTCTTGGGAGTAGAATAGGATTTAGCAGTACTAGATCATTTGGTGAGAAAAAGACCTGAATTTGGAGTTGCTCCACCAGGAAACATTTTTTTTTTTTTTTTCTGTCACCCAGGCTGGAGTGCAGTGGAACGATCTCAGTTCACTGCAATCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTTAGTCTCCCAAGTAGCTGGGATTACAGGCTCCCACCACCACATCTGGCTAATTTTTTTGTATTTTAGTAGAGATGGGGTTTCAGCATGTTGGCCAGGCTGGTTTCCAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTAGGATTACAGGCGTGAGCCACCGTGCACAGCTGCAATTTTTTAAAAAGAAAAAAATGCATAATTTTGCACTTCCATATAGGAAAACCTCTTTATTTTCTTCAAGATAACATATGCGCCAACTCTTTAAGTAATCGACTCTTCTTGGCAGGGGGTTGTTGGAAAAATTAAATCAGTTGCTAATGACAAGAAAGAACATCTTGCATTTAAATATTTGCACATTTTGCCTAGCTCAGAGCCAATTCAAAGGATTTTCTCTTTCATAAGCAAGTGTTTTCCATCATCCTGACACCACCTCTCTGTGGTAGGTAGAAAAGCAGGTACCAACAGGAAAAAAAAATCATTAGATCACCAGAAAGACAAAGAAAAGACAAAGCAAATGCTTAGTTGCTATGGAGGAGGTGCACTGAACTTTTTTTTTCACTGCTCTTTTGTTTATCTAAATTTGGGAATTGTCTGCTTTATTTCTTCTTATTTTAGAACAAACATTCCAACATTTGAAGTTGCATAATCATAAATTTCAACATAGGGGGACAAATATTTACCTGTTCATTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTGGTTTTGAACTCCTGATCTCAAGTGATCCACCCGCCTCGGCCTCCTAAGGTGCTGGCATTACAGGCATGAGCCGCCACGGCCGGCCACAATTTACCACATATACCTGAAACCTTTAAACCTTTAACCTTTTTTCCAGATGTAAAGGGCCTTAAACTTCTAGTTCAGAACACATTTGGCTCCTTCTGTCTGGCATCTATATAAAGGTGGTATTATACTTACTTTTGAGGTCAATATGTTTGAGAGGTGTTGTCATGTAAAGGGGGAAAAGGATGGGCTTTGGATTCAATCAGTTCTGAGTTTGAATTCCATCTTTACCATTCACCATCACCTTGGAAAAATCTATTTCTTTAAGCTCCAGATCCAACAGCTGAAAAATGGGTTTATAGTATTCTCCTTGTGGGGTCGTCATAAGACTCAAGACATAAATAACAAAGCACCATCTTTGCACCTGATAAATACAGAGCATTGTTAGTTTCTGCTATTCAAGGGTCCCAAATCTAGGGGGATATCAGTGTCCTTGACGGAAACCCAACTTCTTTAATGCAAGGGGTACTAAGGAAGGTAGTAGGTACGGTTTGGGTGCTTGCTAGCACCTATAAGAACACAGAGCAGGCAGCTTCTGTCCATTTTTGCGACATCATTTTCATTGTGCATTTTACATCATCTGTGAGCTGGGACTGATGTGTCAACACCTAGACTTCAAAAACAGACTCTGCAGTTTTCTCACAATCTGCTGTAAATTATTGTTCCTTTTCATTCCCTGTATAAAGCCCACTTCCTGTCACTTGTTATTGTTTACTGAACCAATGCTGAAAACACATTTAAAAAAAAAAAAAGGAGAAGAAGAAGAAAGAAAGATTCAAAGATTCACTGAATACCCAGAATATGCCTGTCTCTGCTGGGAATTTAAAAGACTCACTCTCTCAATCAATGAATAACCCTACCTAAATTGACTCAAACTGTACAGAAATCTGTTATGAAACAATGAGACACGTATGATATTAGAATGCTCTTCAAGGACAGTGGCAGCCACAGGGAGGGAATATGTGTTTACCTGACTGAAGCCGGGTTAAAAAAAGGCTTCTCATTAGGAGACAACATTTAAGTGGGATTTTGAAGGATGCATAGGAGATTTTTAGAGGGAAGTATGATCTTAGAAAGAAGAAATGAGAGAACAGCATGTACAGAGACCAGGCGGTGCCCAACAGCATAATGTGCTTCCAGAGCTCTGAGCATCTATCAGAGTACAACACCAGAGTAGGTGGGGCAGAAAAAGTCAAGATGAGCCTGCAAAAACAGGCAAGGCTTGAAATAGCAATGACTTTCTTGCGTGAATTCTTTCTATCAAAAATAAGTTTCCATACACTGTCAAGACAGTCTATTGCCTCACTTTTCTGCTTGGTAATTCTGATGGAAAAGTTTTCAGGAAACATCCAGGAAGTTTTGCCTAATTAAAAATTTAAAGAGACTAAGTTCATCTTTTCAAATAAAGTATCCCCAAAGCATGTTTCCTCAACTTATGAGAACAGTAATAATAATAATAATAACAAAAGAACAACCTTTTTTTTTTTCATGTGACATCCATGGGCCAGTCTCTGTGCTAGATGCTTTGCAAGCTTTATCTCTCTTAAGATTTGAAAAAAACAAAAACAAAAAACACTAGAGGTAGCTGCTGTTATCCCTACTTATAGCTTATCAAACCAAAAACTAAGGTTCAGAAAGGCAAAGTAAAGTCAAGCAGTTAGTATAAGTATTCACCCACAGGTCTGGAGAGTTACAAAGTCCTCTCTCTGCTAAGCCTCAGGCAATGGCCCTAACCTCTGAAGCCTCTCTGTCCTCTGCCCATCATAG
Seq C2 exon
GCTTGGATGCCCCCAGCCAGATCGAGGTGAAAGATGTCACAGACACCACTGCCTTGATCACCTGGTTCAAGCCCCTGGCTGAGATCGATGGCATTGAGCTGACCTACGGCATCAAAGACGTGCCAGGAGACCGTACCACCATCGATCTCACAGAGGACGAGAACCAGTACTCCATCGGGAACCTGAAGCCTGACACTGAGTACGAGGTGTCCCTCATCTCCCGCAGAGGTGACATGTCAAGCAACCCAGCCAAAGAGACCTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041982:ENST00000350763:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=NA C2=0.505
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.7=83.0)
A:
NA
C2:
PF0004116=fn3=WD(100=89.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains