RnoALTA0013347-2/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4380031-4380600:-
Coord C1 exon
chr20:4380512-4380600
Coord A exon
chr20:4380102-4380143
Coord C2 exon
chr20:4380031-4380101
Length
42 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTTTGAGGACCTCACCTAGACC
3' ss Score
-0.81
Exon sequences
Seq C1 exon
CGCCAGTGTAGCTGCTGGGGCTGCTACAGCTGCTACGGCTGCAGCCTCCAGGACAGCCTCCAGGACAAGGGACAACAACAGGAGGAGAG
Seq A exon
ACCAAAGAGAAGGGAAGAGCTCCTGTAACTGCTTGTCTGCAG
Seq C2 exon
CCCTCAGAGTGAAAGCCATGGAGCCCTGGGCTGGGTGCTGCATTTTCCTACGAGGATTCTCATTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-1-6,1-5,1-4,1-3,1-2,1-1,1-0-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTAGCTGCTGGGGCTG
R:
TCGTAGGAAAATGCAGCACCC
Band lengths:
138-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]