RnoALTA0010986-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4488115-4488382:-
Coord C1 exon
chr20:4488287-4488382
Coord A exon
NA
Coord C2 exon
chr20:4488115-4488179
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCAT
5' ss Score
0.49
3' ss Seq
ATGCCCTCTTATTCCAGCAGGAC
3' ss Score
7.44
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGGCCGGTGCCTCTGTGGCCATCCATAAGGAATTCTCCTTACTCACCTGCAGTATCATCAGCTGTCTCACTTTCGGAGACAAG
Seq A exon
NA
Seq C2 exon
GACAGCACTTTGCTGAATGCCACTCACAGCTGTGTCCGGGACTTGCTGAAAGCCTGGAATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428-6-4,6-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.9=100)
A:
NA
C2:
PF0006717=p450=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGGCCATCCATAAGG
R:
ACAGCTGTGAGTGGCATTCAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]