RnoALTA0010986-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4488115-4488382:-
Coord C1 exon
chr20:4488287-4488382
Coord A exon
chr20:4488180-4488182
Coord C2 exon
chr20:4488115-4488179
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCAT
5' ss Score
0.49
3' ss Seq
AGCATGCCCTCTTATTCCAGCAG
3' ss Score
5.55
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGGCCGGTGCCTCTGTGGCCATCCATAAGGAATTCTCCTTACTCACCTGCAGTATCATCAGCTGTCTCACTTTCGGAGACAAG
Seq A exon
CAG
Seq C2 exon
GACAGCACTTTGCTGAATGCCACTCACAGCTGTGTCCGGGACTTGCTGAAAGCCTGGAATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428-6-4,6-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.9=100)
A:
NA
C2:
PF0006717=p450=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGGCCATCCATAAGG
R:
ACAGCTGTGAGTGGCATTCAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]