HsaALTA0002304-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450 family 21 subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:2600]
Coordinates
chr6:32039356-32039606:+
Coord C1 exon
chr6:32039356-32039457
Coord A exon
chr6:32039546-32039584
Coord C2 exon
chr6:32039585-32039606
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
ACTCCCTCCTTTTCTGGCAGGAC
3' ss Score
9.97
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCATCTGTTACCTCACCTTCGGAGACAAGATCAAG
Seq A exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAG
Seq C2 exon
GAGGTGTTAAAAACCTGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852-8-11,8-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(20.5=100)
A:
NA
C2:
PF0006717=p450=PD(2.5=50.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGCCCAGCCCGG
R:
GGCTCCAGGTTTTTAACACCTC
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development