HsaALTA0002304-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:HGNC Symbol;Acc:2600]
Coordinates
chr6:32007133-32007383:+
Coord C1 exon
chr6:32007133-32007234
Coord A exon
chr6:32007323-32007361
Coord C2 exon
chr6:32007362-32007383
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
ACTCCCTCCTTTTCTGGCAGGAC
3' ss Score
9.97
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCATCTGTTACCTCACCTTCGGAGACAAGATCAAG
Seq A exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAG
Seq C2 exon
GAGGTGTTAAAAACCTGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852-8-11,8-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(20.5=100)
A:
NA
C2:
PF0006717=p450=PD(2.5=50.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGCCCAGCCCGG
R:
GGCTCCAGGTTTTTAACACCTC
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)