RnoEX0069237 @ rn6
Exon Skipping
Gene
ENSRNOG00000000435 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:RGD Symbol;Acc:620375]
Coordinates
chr20:4389029-4390007:-
Coord C1 exon
chr20:4389817-4390007
Coord A exon
chr20:4389461-4389614
Coord C2 exon
chr20:4389029-4389124
Length
154 bp
Sequences
Splice sites
3' ss Seq
GCATTGCCCCTTTCCCACAGACA
3' ss Score
9.79
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCCACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACTACATCAATGAG
Seq A exon
ACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGG
Seq C2 exon
GAGGCCTGGTGTGCCGCGCATTGCTGTCTGTCATGGATGAGCACAATGTGGATTCCTTCATCTCCCTTTCTTCTCCACAGATGGGACAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000435_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PU(11.1=49.2)
A:
PF0208910=Palm_thioest=FE(18.8=100)
C2:
PF0208910=Palm_thioest=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTTCGGCTTGGGCTTTG
R:
CTCCATACTGTCCCATCTGTGG
Band lengths:
255-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]