BtaEX6098224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004436 | PPT2
Description
Bos taurus palmitoyl-protein thioesterase 2 (PPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035318]
Coordinates
chr23:27034308-27035452:-
Coord C1 exon
chr23:27035253-27035452
Coord A exon
chr23:27034850-27035003
Coord C2 exon
chr23:27034308-27034403
Length
154 bp
Sequences
Splice sites
3' ss Seq
GCATCGCCCCCTTCCCACAGACA
3' ss Score
9.63
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCGGAAGCATGCTGGGGCTCCCGGAACGGCGGCTCCCTTCGGCGGAGTTCCTGCTCCTGTTGCCATTCCTGCTGCTGCTGCTGCTGCTGCTGCCCGCCGCCCCCGCGCCCCATCGGGCTGCCTACAAGCCGGTCATAGTGGTGCACGGGCTCTTTGACAGTTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
Seq A exon
ACACACCCTGGGACTGCGGTGACAGTGCTCGATCTCTTCGATGGGAGAGAGAGTTTGCGACCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTGTGGCCCCCATCATGGCAAAGGCTCTTCAAGGGGTGCACCTCATCTGCTACTCCCAGG
Seq C2 exon
GGGGCCTGGTGTGCCGGGCACTCCTGTCTGTGATGGATGAACACAATGTGGATTCTTTCATCTCTCTCTCCTCTCCACAGATGGGACAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004436-'7-2,'7-1,8-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PU(10.9=45.3)
A:
PF0208910=Palm_thioest=FE(19.1=100)
C2:
PF0208910=Palm_thioest=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCTCCTGTTGCCATTC
R:
CTCCATACTGTCCCATCTGTGG
Band lengths:
249-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]