HsaEX0049849 @ hg38
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32154587-32155783:+
Coord C1 exon
chr6:32154587-32154777
Coord A exon
chr6:32155030-32155183
Coord C2 exon
chr6:32155768-32155783
Length
154 bp
Sequences
Splice sites
3' ss Seq
GCATTGCCCCCTTCCCACAGACA
3' ss Score
10.24
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCGGGAGCATGCTGGGGCTCTGCGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCTGCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
Seq A exon
ACACACCCCGGGACTGTGGTGACAGTGCTCGATCTCTTCGATGGGAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGG
Seq C2 exon
ATGGGACAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'4-12,'4-10,5-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PU(11.2=49.2)
A:
PF0208910=Palm_thioest=FE(19.0=100)
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development