HsaEX0049848 @ hg38
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32154196-32155183:+
Coord C1 exon
chr6:32154196-32154404
Coord A exon
chr6:32154587-32154777
Coord C2 exon
chr6:32155030-32155183
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCTTATCACCCCTTTCTCAGGCG
3' ss Score
7.44
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
ACTTGGGATAAGTAAACAGCGGGTGGAGCGAGGCCTACGGACCCAGGCCAGGTGGGAGTCTGCACTCTTCAAGGGGCCTGGGCTGCTGCTCACGGGTATTAAAGAACTCCGCGTTGTTCATGGCTGAGGCGATGCATTAGGAAGATCCTGGACCTAGAGAACAAGTCCCCCGAACGCTGAGTTGGAGGCGGGACTTCGGGTGCGCGTTG
Seq A exon
GCGGGAGCATGCTGGGGCTCTGCGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCTGCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
Seq C2 exon
ACACACCCCGGGACTGTGGTGACAGTGCTCGATCTCTTCGATGGGAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'3-10,'3-8,4-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0208910=Palm_thioest=PU(11.2=49.2)
C2:
PF0208910=Palm_thioest=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCCGCGTTGTTCATGG
R:
TAGCAGATGAGATGCACCCCT
Band lengths:
253-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development