HsaINT0131197 @ hg38
Intron Retention
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32153523-32154777:+
Coord C1 exon
chr6:32153523-32153636
Coord A exon
chr6:32153637-32154586
Coord C2 exon
chr6:32154587-32154777
Length
950 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CCTTATCACCCCTTTCTCAGGCG
3' ss Score
7.44
Exon sequences
Seq C1 exon
GGAGTAGAGTAGGGCAGGAGAAACTGGGCCAGGCTGCACTTAGCTCAAGGGGCCTCGAGGACTCTCTGCGTCTCTGGAGACAAGGGCACTACACGCACTTCAGAATGAAGAGTT
Seq A exon
GTAAGTCGCTGACCTGGGGCGGACTGGAGGGTGGGGTGGGGTGGGTGTTGAGGGGCACGCCCGGGCTGGCATCAGCCCTCCAGGCCACCCTGCCACTCACCCAGCACACGGCAAAATGCAGAGGACTACCTTTCCCTGGTCCGCCCCCTGGCCGCCCCTTGGGGAATGCAAACTTCGTGTTCTGCTGCGGAGCCAGACGCCTGTATTGGGAAGTGGGGAGAATCAAGGCGGGGAAATCGGACTTTTGGGTCGCTGGGGGCAACGAAGCCTGGAGAGGCCTTCTTTCCATTCCCAGAATATGTTTGCTGCTTTTTCCTCTCCCCACTGGCCTAAATGGATCGCTCCGCCTGTTTCCTCCCCAGCACCTAGGGCGCAATGGAATATTCCATTGCCCCTCCTGTCCTGGGTCTGTGTTGCGGGGAACGCTCGCGCGGTTGCCAGAGAAAGCCCCGGACGTGACGGATTTGCGCGACCCCAAGCAGCCCGCCCTTCCCCCTCCCATCCGTCATTCCCCTGCGCTCTCTTTCCTCACCCTTCCCCCCGCCACCGTGGGTTCCAGACTTGGGATAAGTAAACAGCGGGTGGAGCGAGGCCTACGGACCCAGGCCAGGTGGGAGTCTGCACTCTTCAAGGGGCCTGGGCTGCTGCTCACGGGTATTAAAGAACTCCGCGTTGTTCATGGCTGAGGCGATGCATTAGGAAGATCCTGGACCTAGAGAACAAGTCCCCCGAACGCTGAGTTGGAGGCGGGACTTCGGGTGCGCGTTGGTGCGTCAACGTGGTGGGGGGGTGTGTTTGTAGGGAGAGGGCTGGAGTAAGTTAAAAGTAGGCTATTTTGTGACACGGACCTGGTGTGGGAGCGAGAGGAGGTGGCTTGATTGCCGGGCGTCTGTTCCGAGGGAGGAGGGTGTTGCCATCTCCCTCACATGCCCTTATCACCCCTTTCTCAG
Seq C2 exon
GCGGGAGCATGCTGGGGCTCTGCGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCTGCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988:ENST00000361568:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0208910=Palm_thioest=PU(11.2=49.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTAGAGTAGGGCAGGAGA
R:
TCATTGATGTATTCCAGCAGGTG
Band lengths:
304-1254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains