HsaALTD0005084-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32152972-32153836:-
Coord C1 exon
chr6:32153766-32153836
Coord A exon
NA
Coord C2 exon
chr6:32152972-32153172
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
3' ss Seq
CAAAACATTTTTGCGCTCAGAAT
3' ss Score
4.77
Exon sequences
Seq C1 exon
GCGTCTGGCTCCGCAGCAGAACACGAAGTTTGCATTCCCCAAGGGGCGGCCAGGGGGCGGACCAGGGAAAG
Seq A exon
NA
Seq C2 exon
AATGGTGTAGAGTGACGATGAGGTGGCGGTAAGGGGTTGAGCGCTCACGCGAACGCCTAAGTGACCAGAACGACTGGTGTGAAGCCGTGATCTGACTCTGTGGAGCCTGGGACTGGTTTCAGCGAGAGCCTCTGTACTGCTCTGTAGTCTCTGCTAGGACATGGACGAAAAGGGACGCAGCCGGGAGAGCGACTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314-3-5,4-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGAAGTTTGCATTCCCCA
R:
GTCGTTCTGGTCACTTAGGCG
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development