BtaINT0117045 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004436 | PPT2
Description
Bos taurus palmitoyl-protein thioesterase 2 (PPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035318]
Coordinates
chr23:27035253-27035589:-
Coord C1 exon
chr23:27035575-27035589
Coord A exon
chr23:27035453-27035574
Coord C2 exon
chr23:27035253-27035452
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
CCTCATCGTCCCCTTCTCAGGCG
3' ss Score
8.18
Exon sequences
Seq C1 exon
GGACTGGAGTAAAAA
Seq A exon
GTAGGATGTTTTATGACAAGGACCTGGTGTGGGAACGGGTCGGGGAGGCTTGATTGCCGGCGTCTGTTCCGAAGGGAGGGTGTTGTCATCTCTCTCACAGGTCCTCATCGTCCCCTTCTCAG
Seq C2 exon
GCGGAAGCATGCTGGGGCTCCCGGAACGGCGGCTCCCTTCGGCGGAGTTCCTGCTCCTGTTGCCATTCCTGCTGCTGCTGCTGCTGCTGCTGCCCGCCGCCCCCGCGCCCCATCGGGCTGCCTACAAGCCGGTCATAGTGGTGCACGGGCTCTTTGACAGTTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004436:ENSBTAT00000005815:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0208910=Palm_thioest=PU(10.9=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]