HsaALTD1052389-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32153737-32154389:-
Coord C1 exon
chr6:32154289-32154389
Coord A exon
chr6:32154169-32154288
Coord C2 exon
chr6:32153737-32153836
Length
120 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTCCCCACTTCCCAATACAGGCG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTCCCGCCTCCAACTCAGCGTTCGGGGGACTTGTTCTCTAGGTCCAGGATCTTCCTAATGCATCGCCTCAGCCATGAACAACGCGGAGTTCTTTAATACCC
Seq A exon
GTGAGCAGCAGCCCAGGCCCCTTGAAGAGTGCAGACTCCCACCTGGCCTGGGTCCGTAGGCCTCGCTCCACCCGCTGTTTACTTATCCCAAGTCTGGAACCCACGGTGGCGGGGGGAAGG
Seq C2 exon
GCGTCTGGCTCCGCAGCAGAACACGAAGTTTGCATTCCCCAAGGGGCGGCCAGGGGGCGGACCAGGGAAAGGTAGTCCTCTGCATTTTGCCGTGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAACTCAGCGTTCGG
R:
GGCAAAATGCAGAGGACTACCTT
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains