MmuEX0036893 @ mm10
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34626459-34628510:-
Coord C1 exon
chr17:34628118-34628510
Coord A exon
chr17:34626805-34626995
Coord C2 exon
chr17:34626459-34626612
Length
191 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTCGTTCCTTCTCAGGTG
3' ss Score
9.49
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
AAATTTTTACCCACGGCCTCATACCGGTGGTTCTGGTTTTTCAACCGTGCATGGATCAGAGGGAACCTTGGACCCATCCCTCCCACACCATCTTCAATACACGCTTCTGGTTTTATTAAGTTCAGATTAAACAAAGTCCCTGAGTACAGGCCTTGAAGCTCAGAAACCCTGCAAACTTATTTAATTGCTAAGTAAAAGCACTGACGGATAAAGGCTATTCCCTGGCACTCCGGCGCGCCGTAGGGGTCACGGGTAGGCCGAGTGGTGCCAGCGCCCGCAGCGGGGAGGAAGTCTGCCTGCACTGGCAGGGTTTGTGTCGCCAGCAGCCCGCAGGGATCTGAGGAGCAGTTTGTCGGGGTCGCTCAGGATTGAAAGACTGGTGGAAATCCTGTG
Seq A exon
GTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCGTTCCTGCCGCTGCTGATGCCCGCAGCCCCCGCAGCCCACCGCGGGTCCTACAAGCCCGTGATCGTGGTGCACGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACTATATCAATGAG
Seq C2 exon
ACACACACCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGCAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTACAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAAGGAGTGCACCTCATCTGCTACTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0208910=Palm_thioest=PU(10.2=44.3)
C2:
PF0208910=Palm_thioest=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTATTCCCTGGCACTCC
R:
CCGCAAACTCTCTCTGCCATC
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types