RnoEX0069236 @ rn6
Exon Skipping
Gene
ENSRNOG00000000435 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:RGD Symbol;Acc:620375]
Coordinates
chr20:4389461-4390436:-
Coord C1 exon
chr20:4390342-4390436
Coord A exon
chr20:4389817-4390007
Coord C2 exon
chr20:4389461-4389614
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTCGTTCCTTCTCAGGTG
3' ss Score
9.27
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
Exon sequences
Seq C1 exon
CGCTCTCCTTGTCCCCTTTTCCCCCCGTACCCCGTGGATTCCCGACTAGGTACAAGTAAACAGCTGGCGGAACGAAGCCTCCAGACACAGGCCAG
Seq A exon
GTGGGAGCATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCTTTCCTGCCGCTGCTGTTGCCCGCAGCCCCCGCACCCCACCGCGGGTCCTACAAGCCAGTGATCGTGGTGCATGGGCTCTTTGACAGTTCATACAGCTTCCGCCACCTGCTGGACTACATCAATGAG
Seq C2 exon
ACACACCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGCAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTTCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGAAAAGGCCCCTGAGGGGGTACACCTCATCTGCTACTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000435-'7-16,'7-13,11-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0208910=Palm_thioest=PU(11.1=49.2)
C2:
PF0208910=Palm_thioest=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCCTTGTCCCCTTTTC
R:
CCTGGGAGTAGCAGATGAGGT
Band lengths:
249-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]