DreEX6072697 @ danRer10
Exon Skipping
Gene
ENSDARG00000104542 | ppt2
Description
palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
Coordinates
chr19:19281293-19282797:-
Coord C1 exon
chr19:19282423-19282797
Coord A exon
chr19:19281880-19282033
Coord C2 exon
chr19:19281293-19281388
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTATGGTGACAGTCT
3' ss Score
5.18
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACTTGCGGATGTGACGTGGGTGTGACACTCTTGGCGATGCACTGGCCGGATGCTGCGCAAGCAGATGCATATAGACACATATTTGATAGACGTAGTCAAACGAATTGTGCAGAAACTGAAAGTTTAACCTTCACATGGATTTGCTTAAGACATTTATTATTTTGATTTTTATTGTAGCGTTTTAGACGTTTCTTACCTATATAATACTTTGTATTTTATCTTTGTGTTATTGTTAGTATGAAGGGTGCGTGTGTGTGGACGCTGGTGTCTGTTTGTGTGTTTTGTGTGTGTGTTGCGTATAAACCGGTGATCGTCGTTCACGGGCTCTTCGATAGCTCAGCTGACTTCGTCCACCTACACCGATTCATCAACCTG
Seq A exon
TCTCACCCGGGCACTAATGTCACTGTCCTGGACCTATTTGACCGCAGTGCCAGCCTGCAGCCCCTCTGGAAGCAGGTGGAGGGCTTCACAGAAGCCATATATCCCATCATGCAGAATGCAGCTGATGGTGTCCACTTGATCTGCTACTCACAAG
Seq C2 exon
GTGGCTTGGTATGTCGAGGAATTCTGTCCACTCTCCCAGACCATAATGTACACTCTTTTATATCTCTGTCTGCTCCACAGGCAGGACAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104542-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0408311=Abhydro_lipase=WD(100=50.0),PF0208910=Palm_thioest=PU(10.2=58.7)
A:
PF0208910=Palm_thioest=FE(19.2=100)
C2:
PF0208910=Palm_thioest=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTAGTATGAAGGGTGCGTGT
R:
CTCCATACTGTCCTGCCTGTG
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]