RnoINT0004971 @ rn6
Intron Retention
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4448314-4450301:+
Coord C1 exon
chr20:4448314-4448607
Coord A exon
chr20:4448608-4450010
Coord C2 exon
chr20:4450011-4450301
Length
1403 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TTTTCTGCCCCTCTTCCTAGTGC
3' ss Score
10.44
Exon sequences
Seq C1 exon
ACAGGGCTGAGGTGCAGCCTGGGAAGTCATCGGTCCTGCCACGCCTGGGTGAGCTGACAGTGACAGGCCTGACCTCTGACTCCCTGCTCCTGCACTGGACCGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCGGGCAATACCCGTGGAGGGACCCCAGCGTTCGGCACCTGTCACAGCCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCACGGTCCCCTGATCGCTGAAGCCAAGATCC
Seq A exon
GTGAGTGACATCAGGCACCCCGGCCAGCCCCGCACTCCATACCAGGGAAAGCAGTGGAAGGCAGGAGAGGCAAGGGAGTAGGTGAAGTAGAGTGGGTGGATCCCCAGAGAATGCACAGTACTCTTTGGGCTCGACAGCAGGACATGTGGGGTGCTGAGGGGCTCAGTTCTCGGGGTTCTGTGTGAGAAACCTCTGAGAGCCTTTAAGTGCAATACCGAAACGATGACCTCACAAACAAGGGTCTGCCGCAGGAGCATGCTCGGGAAGAGAGTCCACAGCTGGTGAGACTGATGGCTGATGCTGGTCTGGAGATCCAGGCAAGCCCCATGTCCCTGGGCCATCCACTTCTGTCCCCTAAGCAGCAGCAGGTGGGGAGCAATGGAGGCTGAGTCACATTCGTGCTCAGACACAGTGCACTCAGACCTGTGCTCACAGCATTTTTAAAAAAAGATTTATTTATTTTATGCATAAGAGTACACTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGCGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGAGCCATCTCTCTGAGCCATCTCTCCAGCCCCCACTCAGAGCATCCTTGAACCAACACAGGTCCTTATGGCAGCCGTGAGTGGTGCCGCTAGGTCGCAGGCGAGAAGAGCTGAAGGACAGACAGAAGGTGTCTGGTAGAGTCTGGCAGACCTCAGGGTTACCTGGAGTCCTGGTAGCTGTGGGGAGGAGAGAACACGTGAGGGGAGGGGAGGTGGAGAAACAGCAGGGGAGTGTGCCAAATGCTAGGAGACAGGGTGTGGCCCGGGAGCCGGAGTCCGCAGGAGTGAGTTAGAACTCTCAAGTGTTCACAGGACTTAGCAAGTGGCAGGTCACCTGGAGCTGCCTGGTGGAGGTTATGGGGTACAGAAAAGTATGGAGTCCTCTGGGGACTGTGCCAACATGGGAGATGGAGACGGATACACTCAGAAAATGGGTACAGCCAGGGACAGAGCAGCAAGTGGGTGGGTACCCAAAGAGGAGGACCCAGTGTGGGACTCTTTTCCATATTGACACACCCCAAGGATGTTCTGTCTTGGAGGAGAAACTGGCTAGAAGTTAAGTTGGAAGCAGAGCGCCTGCCTCCGGGAGATTTCTCTGGCTGCACAGTTGTGGAAAGGGGGGCCTGGGGGGATACCCCTCCCCTTTTGGAGCCTCTTTCCCTTGGCTGGGAGTAGCCACTGCAACACTGGGCCATTTAAAAGGCATCACTACTTCCTGTCACCAGGCACGGCCTCTGATAGAGCTCACAGGACTGCACCGGCTGCACAGGACTTCTTCCTCACAACCCCCCTTTTTCTGCCCCTCTTCCTAG
Seq C2 exon
TGCTTCAGAGTGACCCTGACTCAGGGTCCCCACCCCGTCTGGGAGAGCTATGGGTGACAGACCCCACCCCACACTCACTGCACCTCTCCTGGACTGTTCTCGGAGGCCAGTTTGACTCCTTCATGGTCCAGTACAGAGACAAGGAAGGCCAGCCCCATGTGGTGCCTGTGGAGGGGCCTGAGCGCTCAGTGGTGATCTCCCCACTGGACCCCAATCACAAGTATAGGTTCACTCTGTTTGGGGTTGCCAATAAGAAGCGGTATGGGCCCCTTACTGCTGATGGCACTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581:ENSRNOT00000077635:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACAGCCTTGGAACCAG
R:
GGCAACCCCAAACAGAGTGAA
Band lengths:
347-1750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]