HsaINT1044863 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32082036-32084709:-
Coord C1 exon
chr6:32084413-32084709
Coord A exon
chr6:32082327-32084412
Coord C2 exon
chr6:32082036-32082326
Length
2086 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTCTACCCACTCTTCCTAGTGC
3' ss Score
7.34
Exon sequences
Seq C1 exon
ACAAGGATGAGGAGAAGCCTGGGAAGTCCTCAGGCCCACCACGCCTGGGTGAGCTGACGGTGACAGACAGGACCTCCGACTCCTTGCTCCTGCGCTGGACGGTCCCCGAGGGCGAGTTTGACTCCTTCGTGATCCAGTACAAAGACAGGGACGGGCAGCCCCAGGTGGTGCCCGTGGAAGGACCCCAGCGCTCGGCCGTCATCACCTCCCTGGATCCTGGCCGCAAGTACAAATTTGTCCTGTATGGGTTTGTTGGCAAGAAGAGGCATGGTCCGCTGGTGGCTGAAGCCAAGATCT
Seq A exon
GTGAGTGACAGCAGTAACACCCTGCCCTCTGTACTGCCCTGAAGAGGTTTTCTCAGTGCTTTGGGAACCTGCTTTGGGAGCTCCGGGAAGGCTTCCTGGAGGCAGTGGTGCATGAGCTGAATTCTGAAGGGAAAGTAGTGGTGGGGCAGGCAAAGAGTTTGAGAAGCTCAGTGCAGCCTGAGGGAGTCACGGTGAGTAAGGTGGGGAGAGCATGGCCAGTAAGAGAATCACTGTTACAGTTTCCTCTGGCTGGAGAACAGGGCATGTGGGGGGTGCCAAAGGGCCTGGTCTCAGGGCTTCCTGTGCTGTGCTGAGGGGCTTGGGCCTCATTCGAAGGCCCCTAGAGGGCCTCTGAAGGGTAAAGTGGGAGAGTGATGAGACTAGATATTTATCTTGCAAATAACCGGGTGGCTGCTGAGACTAGCTGGAGAAGTGAGTTAAGAGCTGGTAAAGGCTAGCAGGGTTGATCCTGCCTATAATCCCAGCACCTTGGGAGGCCAAGGCAGGAGGATCGCTTGAGGCTAGGAGTTTGAGACCAACCTGGCAACATAGTGAGACCCCCCATCTCTACTATAACAAAAGATATTAGCCAGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTACTTGAGAGGCTTGAGGTGGGAGGATCGCTTGAGCCCAGGAGACCGAGGCTGCAGAGAGCCATGATTGTGCCACTGTACTCCAGCCTGGGTGCTATCCACACTCTGCACAGAGCAACACCCTGTCTCAAAAAAAAGAAAAATGATGATGGGTCAGCTGGGATGGTGGCAGTGGGGCTGGATGGGGGAGGCGAAGGAAAGCAAGGTGTACCAGGCAGCCCCCAGGGTTCTGGATGAGACAGTCCCATTCCCTGAGGCAGGGAGCAGCAGAGGTGGGGAACAACGCCTTAGATAAACTTAGATCAATATCTAAGAGACACTTACATAAATACCTTTTGTGCATTTATTGAGAGTCAGTTGTGATCAAGATGTTCTCTAAGTGGATCATCACACCCCATAAAGCACACCTGGGAGGCATGCCTACTTTATAGGTCAGGAGAATTGAGGCACCAGAGTAGTCGTGTGGGGTTGGGGAAGAGACAGGGCCACTGGAACCCTGTCGACAGCCTACACTCACAGCGGAGGCAGAGGAAGAAGAGCCCACAGGGTAGCTTGCGGAGTGACTTGCAGGGAGGGGCAGAACCAGGGAGGGTGCTGTCTGGACTCCAGGAAGGAGGGTGCGGTTGGACTTGTCAGATTCCGGAACAGTGATTCAAGGGCTACGGAGCGTCCACAGAATTTAGCAATGGCAAGGCCACCCCTGGCCTGCATGAGAGCTGCTGCCTGGTGGAGGGGTGGAGCTGGATCGGGAGGGTGGTGGAGGTGAGGACATGGCTGCAATCAGTGTAGACATCACTTTCTGGAATCTGGGCTGGGAATGAGAGCAAAGAGGGAAGATGGAGGCTAGAGAGAGATGCACACAGAGTGGGGGTGAGGAGGGGTGTGACAGTAGCTTGTTGAAATGCTGATGGCACAGCTGCTGGGGAGTGAAGGGTCAGTGCTGCAGGCGAGGGAGTCCATCCATGGGTCAAAGTTCCCAAAGAGGAGGAGAGGCCTGCAGCATAGATGAGGGAGGCTGTCCCACGTTAAAACGCTTCAAGGATTGTGCTCTCCTCTCTTGGAGAAGAAGCCAGCTAGTAGTTAGGCTTGGAAGCAGTGGAGGTTGTACTGGGAAGATTTCCCTGGCTATGGAGATGTGAAAGGGCCTGGCTGGGCTCCCCTCTTTCTGAAGCTCCCTGCTGCTCTGGTTTGTGGTTGGAGGCAGAGCCACACTAGTCCACGCAGTGCTTCCATGCCGTTTGAAAGAAGGCACCCATTCCTTAAAGTGGACACCACTCCTCACCAGGGCACACAGCTCGGCAAGCAGAGTGCTGGCTGGATTTCAGTCCCTCTGTACTCCCTCAGCAAATGCACTTTTGTGCAGTGAACAACCTGCACAGCCTCACACAGCATTCCTATGTGGGATTTGGCTTCCCCATTCTCCTTGGACCTAAGTCTCTCCCTTCTCTCTACCCACTCTTCCTAG
Seq C2 exon
TGCCTCAGAGTGACCCAAGTCCAGGGACTCCACCCCACCTGGGAAACCTGTGGGTGACAGACCCTACCCCAGATTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACACCTTCATGGTCCAGTACAGGGACAGGGATGGACGGCCCCAGGTGGTACCTGTGGAAGGGCCCGAGCGTTCATTTGTTGTCTCCTCACTGGACCCTGACCACAAGTACAGATTCACTCTGTTTGGAATTGCGAACAAGAAGCGGTATGGCCCCCTCACGGCCGATGGCACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.490
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=80.0)
A:
NA
C2:
PF0004116=fn3=WD(100=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains