BtaINT0151360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27117342-27119909:-
Coord C1 exon
chr23:27119616-27119909
Coord A exon
chr23:27117633-27119615
Coord C2 exon
chr23:27117342-27117632
Length
1983 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
CTCCCACCTCCTCTTCCTAGTGT
3' ss Score
8.81
Exon sequences
Seq C1 exon
ACAAGGATGGGGAGAAACCTGGGAAACCCTTGGCCCCACCTCGCCTGGGCAAGCTGACAGTGACAGACGTGACCTCGGACTCCCTGCTTCTGCACTGGACAGTCCCTGAGGGCGAGTTCGATTCCTTTGTGATCCAGTACAAAGACAGGGACAGGCCCCAGGTGGTGCCTGTAGAAGGGCCCCAGCGCTCAGCCCTCATCTCCAACCTGGACGTCGGCCGCAAGTACAAATTTGTCCTATACGGGCTCGTGGGCAAGAAGAGGCACGGCCCCCTGGTGGCTGAAGCCAAAATCT
Seq A exon
GTGAGTGACAGGGGTCACCCAGGCCCCTGCCCCTGCCCTCTGCGCGGTCCTAATGGAGGTCTCCCCAGTGCTTTGGGAACTCCCAGAAGTCTTCCTGGAGGCGGTGGTCCCTGAGCTGAATCCTAAAGGGAAAATTGTGGTGGGTCAGGCAGGGAGGTTGAGGAGGGCAGTGCCAACAGAGGGAGCTGTGGAGAGTGAGGCAGGAGTGAGAGTGGCCCTGTAAGAGAATCAAAGTCTCTCCTCCGGATAGCAGGGTAGGGCACCTGGGGGCTGAGGACACTGGTCTCACTGATCTCCAGTGAGTGAGTCACTTAGGCCCCATTTGAGGACCCTAGGGGGCCTCTGAAGTGCTTTAAATGGGAGAATGACCCGAATCAATATTTATCTTACAAATAGCTCTGAGGCTGCTTCAGAGGACAGCTGGAGAAGTGAGTTAGGAACCGGCAAACGAGGATGCTGGCCTGGCAGGGATGGTGGCAGTGAGGCTGGGATTGGGTGGGGTGAAGGAGAGCAAGGAGGCCCAGGCACCCCACGCTTCTGGATCCGGCAGTGCTGTTCCCTGAGGCAAGGAACAGCGGATGTGAGGAACAATGCAACAGGGCAGCAACACTTAGTCAGACATCTTTCAAGCGTTTAAGTGTCAGATGTGTTCAAGATGTTCTAAGAGAATGATCACACTTAATCCTCACAAGCAGCCTTGTGAGGCATGCTCATTTCACAAATGAGGAGAGGGGCGGCATAGAGAGGGCAAGGCCACTTGGGCAGAAAGTGAAGGGGCCATAGCTCTCTCCCGCCGCCCTCCTGGGACTGGAGAGCAGAGAAAAGGCCTGAGCATGGAGCATGTCCCAGTGGGCAGAAGCCAGGGTGGGGAGGCAGGGAGGAGAGACATGGCCCCTGGGACCCTGGAGGTGGCCATCACTCATGGCATGAACAGAGGATCAGGATCTGCAGGGCAGCCTGAGGGGGGAACTGGGGAGAGGAATGCCAAAATGAAGGGCGAGGTCAGACATGTCAGATTCCGTACGAGTGACTCAGGGCTGCAGAGTGTCCACAAGACTTAGCAACGGCAAGGTCACCACTGATCCTGGTGGGAGCTGCTGGTGGAGGGCAGGGCTGGGTTGGGAGGGCGATGAAGGTGAGGACATGAGTACAAGCATCTCTCTCTGGAATCTGGGCTGGAGTGGAGAGCGAAGAGGGAGGGTGGAGGCTGGAGGGCGATGCAGCTGAGCGGAGGAGTTTGCGTAAATCCTGAGGGCACAGCTGATGGAGTGAGAGTGGGAGCGGATAAAGTGGGGCCCAGAGCACAGTTGTGGGGGGCTCTCCCACAAGAAAATGCTCCTAGGACCAAGCACCCCTCTCTTGGAGAGGAAATCAGCTAGTTGTTAGGTCTGGAAGCAGTGGAGGCTGTCCTGGAAGACTTCCCTGGCTGTGGAGATGTGGAAGGGGCTCACTGCACTTCCTTCTCTCTGAAGCCCCTCTCCAGTCTGCACAATAAGTGAGGGCCGCACTAGTCCATACAGCGGGCTTCCCTGGTGACTCAGCGGTAAAGAATCTCCCTGCCAATGCAGGAGGTTCAGGTTCGATTCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGGGGAGCCTGGCGGGCTACAGTCCAGGGGGTGGCAAAGAGTCAGACACGACTTAGCAACTAAACAACAGCAGTTAAGACAGTGCTTTCATGCCACGTCAAATGAGCTGCCTGTCCTTTTAGGTGGGCACAGCCGCTTGCCAGGGTGCACAGCTTGGCAAGCAGAGTGCTGGCTGGGTTTCAGTCTGTCCGCGCTGCCTTCACCACGCACCTTTGTGCAGTGAACAGCCTGCACAGTCTCACACAGCATTCCTAGGGGGGAGACGGATTTCTTCTTCTCTTTTGACCCGTGTCCCTCCCTTCTCTCCCACCTCCTCTTCCTAG
Seq C2 exon
TGTCTCAGACTGATCCCAGCCCAGTGACTCCACCCCGCCTGGGGAAGCTGTGGGTGACTGATCCCACCCCAGACTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACTCCTTCATGGTCCAGTACAGGGACAGGGCCGGCCGGCCACAGGTGGTGCCCGTGGAAGGGCCCGAGCGCTCGGTCATTATCTCCCCGCTAGACCCTGACCACAAGTACAGATTCACTCTGTTTGGGATTGCCAACAAGAAGCGGCATGGCCCCCTCACGGCTGATGGCACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444:ENSBTAT00000001893:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=79.8)
A:
NA
C2:
PF0004116=fn3=WD(100=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGACAGACGTGACCT
R:
CTCAGGGACAGTCCAGGAGAG
Band lengths:
344-2327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]