RnoEX0002719 @ rn6
Exon Skipping
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4444016-4448607:+
Coord C1 exon
chr20:4444016-4444279
Coord A exon
chr20:4445032-4445754
Coord C2 exon
chr20:4448314-4448607
Length
723 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTTCTCGCTTGGCAGCAC
3' ss Score
9.39
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TGATCGATGGTCCTCAGGACCTCCAAGTGGTAGCTGTGACCCCGACCACACTGGATCTCAGCTGGCTGCGCCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTATGTCAGTGCTGGCAACCAAAGGGTGCGACTGGAAGTTCCTCCTGAGGCAGACAGAACTCAACTAACTGACCTGATGCCAGGTGTGGAGTACGTGGTGACTGTCACTGCAGAAAGAGGCCATGCTGTCAGCTACCCAGCTTCTGTCAGGGCGAATACAG
Seq A exon
CACCAGGCCACTACAGTTACCCGGAGGTGCGCCCCCCAGTCCCGCCCCCCAATCCCCGTCCCCGGCCTCCGCGGCCCTCCCGGCCCTTGCTGCCCCCAGAGGGGGGCGAGAAGGAGTGGCATCTCCGGCCGAGCCTGCCCCAGCCTCCCCGACGGCCGTGGGGTAACCTGACGGCTGAACTGGGCCGCTTCCGTGGCACAGTACAGGACCTGGAGCGTCACTTGCGAACCCACGGCTACCCACTGCGCGCCAACCAGACTTACGCGTCGGTGGCGCGCCACATCCATGAGTTCCTGAAGCGCCATCAAACAGCGGGTGCCCCAGCATCCCAGCCACGTCACCCCCACCCCACCACTAGTCCCACCCAGAGCACCAGGAAGCGGGACTCGGACCAGGGTGCTGTGGGCCCAGCATCCTATGGTGCACACCCGGTGACTGCAACGCGCCACCCGAAACCGGAGGTGCTGGGCAGTGCAGCCGACGGCTCGCTGATTGTGTCCCTGGACGGGCTCCGGGGTCAGTTCGAACGAGTGGTGTTGCGCTGGCGGCCACTGCCTCCAGCCAAGGGCCCCAGCGGGGAGCTGACTGTGGACGGTTCGGAACGCACTGTCCGCTTGCCCAACCTCAGGCCCGGCACTACTTACCACGTGGAGGTCCATGGGGTACGGGCAGGGCAGACTTCCAAGTCCTACGCCTTCATCACCACCACCGCCACCACCACAG
Seq C2 exon
ACAGGGCTGAGGTGCAGCCTGGGAAGTCATCGGTCCTGCCACGCCTGGGTGAGCTGACAGTGACAGGCCTGACCTCTGACTCCCTGCTCCTGCACTGGACCGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCGGGCAATACCCGTGGAGGGACCCCAGCGTTCGGCACCTGTCACAGCCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCACGGTCCCCTGATCGCTGAAGCCAAGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGTGCGACTGGAAGTT
R:
CTGGTTCCAAGGCTGTGACAG
Band lengths:
358-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]