RnoALTD0000534-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4447087-4448607:+
Coord C1 exon
chr20:4447087-4447295
Coord A exon
chr20:4447296-4447455
Coord C2 exon
chr20:4448314-4448607
Length
160 bp
Sequences
Splice sites
5' ss Seq
TGGGTACAT
5' ss Score
1.38
3' ss Seq
TTTTCATTCCCAAACCCCAGACA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GGTCCTTACCCTCTGGCCTCTTGGAGGCTACTGATGAGCCTCCTCCCTCGGGCCCCTCTACGACCCAAGGGGCTCAGGCCCCTATCCTGATCCTGGAGCACCACCCGCTGGGAGAGTTGAAGGTGCTGGGCAGAGACAAGGCAGGGCGCCTCCGTGTGGCCTGGACTGCCCAGCCTGACAGCTTTGCCCACTTCCAGCTGCGCATGCAG
Seq A exon
GTGGCCGAGGGGCCCTGGGCTCACGAAGAACTGCTACCGGGACACGTCCACCAGGCTCTGGTGCCCCCACCCCCTCCCGGATCCCCCTACAAGCTATTCCTCCAAGGGATCACCCCTGGGGGCGAGCCCTCTGTTCCTATCACCTACCAAGGCATTATGG
Seq C2 exon
ACAGGGCTGAGGTGCAGCCTGGGAAGTCATCGGTCCTGCCACGCCTGGGTGAGCTGACAGTGACAGGCCTGACCTCTGACTCCCTGCTCCTGCACTGGACCGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCGGGCAATACCCGTGGAGGGACCCCAGCGTTCGGCACCTGTCACAGCCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCACGGTCCCCTGATCGCTGAAGCCAAGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581-6-7,7-7,8-7,9-7-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTTTGCCCACTTCCAG
R:
CTGGTTCCAAGGCTGTGACAG
Band lengths:
249-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]