HsaALTD1034468-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32084413-32086049:-
Coord C1 exon
chr6:32085750-32086049
Coord A exon
NA
Coord C2 exon
chr6:32084413-32084709
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTACAT
5' ss Score
1.38
3' ss Seq
TTTTGCCTCTCAAACTCCAGACA
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGGCCCAGGCTCCTCTCCTGCAGCAGCGCCCCCAGGAGCTGGGAGAGTTGAGGGTGCTGGGCAGAGATGAGACAGGGCGCCTCCGTGTGGTCTGGACCGCCCAGCCTGACACCTTTGCCTACTTCCAACTGCGCATGCGGGTGCCCGAGGGGCCGGGGGCACATGAGGAAGTGCTGCCAGGGGACGTCCGCCAGGCTCTGGTGCCTCCACCCCCTCCTGGAACCCCGTATGAGCTGTCACTTCATGGGGTCCCTCCTGGGGGCAAGCCCTCTGACCCCATCATCTACCAAGGCATTATGG
Seq A exon
NA
Seq C2 exon
ACAAGGATGAGGAGAAGCCTGGGAAGTCCTCAGGCCCACCACGCCTGGGTGAGCTGACGGTGACAGACAGGACCTCCGACTCCTTGCTCCTGCGCTGGACGGTCCCCGAGGGCGAGTTTGACTCCTTCGTGATCCAGTACAAAGACAGGGACGGGCAGCCCCAGGTGGTGCCCGTGGAAGGACCCCAGCGCTCGGCCGTCATCACCTCCCTGGATCCTGGCCGCAAGTACAAATTTGTCCTGTATGGGTTTGTTGGCAAGAAGAGGCATGGTCCGCTGGTGGCTGAAGCCAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-15-26,16-26-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=WD(100=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCTGACCCCATCATCTA
R:
TCACGAAGGAGTCAAACTCGC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains