MmuALTD1020876-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34681954-34683577:+
Coord C1 exon
chr17:34681954-34682283
Coord A exon
chr17:34682284-34682322
Coord C2 exon
chr17:34683284-34683577
Length
39 bp
Sequences
Splice sites
5' ss Seq
TGGGTACAT
5' ss Score
1.38
3' ss Seq
CTTTCGTCCCCAAACCTCAGACA
3' ss Score
6.01
Exon sequences
Seq C1 exon
GGTCCTTACCCTCTGGCCTCTTGGAGGCTACTGATGAGCCTCCTCCCTCGGGCCCCTCTACAACCCAAGGGGCCCAGGCCCCTATCCTGATCCTGGAGCACCACCCGCTGGGAGAGTTGAAGGTGCTGGGCAGAGACAAGGCAGGGCGCCTCAGTGTGGCCTGGACTGCCCAGCCTGACAGCTTTGCCCACTTCCAGCTGCGTATGCAGGTGGCCGAGGGGCCCTGGGCTCACGAAGAACTGCTACCAGGAGACGTCCAGCAGGCTCTGGTGCCCCCACCCCCTCCCGGAGCCCCCTACAAGCTATTCCTCCATGGGATCACCCCTGGGG
Seq A exon
GCAAGATCTCTGTTCCTATCACCTACCAAGGCATTATGG
Seq C2 exon
ACAGGGCTCAGGAACAGCCTGGGAAGCCATCAGTCCAGCCACGCCTGGGTGAACTGACAGTGACAGGCCTGACCTCTGATTCCCTGCTCCTGCACTGGACTGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCAGGCGATATCCGTGGAGGGACCCCAGCGTTCTACACCCATCTCAGGCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCATGGCCCACTTATGGCTGAAGCCAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-11-6,12-6,13-6-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=WD(100=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCCCCCTACAAGCTATT
R:
CAGGCCTGTCACTGTCAGTTC
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types