HsaEX0066431 @ hg19
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:11976]
Coordinates
chr6:32053527-32056825:-
Coord C1 exon
chr6:32056562-32056825
Coord A exon
chr6:32055028-32055768
Coord C2 exon
chr6:32053527-32053895
Length
741 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTGCCCCTGGCAGCAC
3' ss Score
8.3
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TGATCGATGGGCCCCAGGACCTCCGAGTGGTGGCTGTGACACCGACAACACTGGAGCTTGGCTGGCTGCGTCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTACGTCAGTGCCGGCAACCAGAGGGTGAGGCTGGAAGTGCCCCCTGAAGCAGACGGGACGCTGCTGACTGACCTGATGCCAGGCGTAGAATATGTGGTGACTGTCACAGCGGAGCGGGGCCGGGCAGTCAGCTACCCAGCTTCTGTCAGGGCCAACACAG
Seq A exon
CACCAGGCCACTACAGTTACCCGGAGGTGCGCCCCCCAGCCCCGCCCCCCAAGTCCCGGCCCCGGCCAGCCCCAGCCCCGCGGCCCCCACGGCCCCCTTGGCCCTCGAGGCCAGCAGAGGAAAGGGAGGAGGAGTCCCCGCCCAGGCCAAGCCTGTCCCAGCCCCCACGGCGGCCTTGGGGCAACCTGACGGCCGAGCTGAGCCGTTTCCGCGGCACGGTGCAGGACCTGGAGCGCCACCTGCGGGCTCACGGCTACCCACTGCGGGCCAACCAGACTTACACGTCGGTGGCGCGCCACATCCATGAATACTTGCAGCGGCGTCTGTTGGCCGCCGCCCCAGCCGGCTCCCCCGCACCCCCGCCCCGCCACCCCCGCCCCACCGCCAGCCCTGATCCCGGCACCAGGAAACGGGACTCCAACCAGGGAATCTACGGCCTCTCGCCTGAAGGCGTCGACCGGGTGGCTGCGTCCCGCCACCCCAAGCCAGAGGTGCTGGGCAGTTCCGCCGATGGCGCGCTTCTCGTGTCTCTCGACGGGCTCCGCGGCCAGTTCGAGCGCGTGGTGCTGCGCTGGCGGCCTCAGCCGCCTGCAGAGGGCCCCGGCGGTGAGCTGACTGTGCCGGGCACCACGCGCACCGTCAGCCTGCCCGACCTCAGGCCCGGCACCACCTACCACGTGGAGGTCCACGGGGTGCGGGCGGGGCAGACCTCCAAGTCCTACGCCTTCATCACCACCACAG
Seq C2 exon
GGTCCTCACCCTTGGGCCTCTTGGGGACTACCGATGAGCCTCCTCCCTCAGGCCCCTCGACGACGCAAGGGGCCCAGGCTCCTCTCCTGCAGCAGCGCCCCCAGGAGCTGGGAGAGTTGAGGGTGCTGGGCAGAGATGAGACAGGGCGCCTCCGTGTGGTCTGGACCGCCCAGCCTGACACCTTTGCCTACTTCCAACTGCGCATGCGGGTGCCCGAGGGGCCGGGGGCACATGAGGAAGTGCTGCCAGGGGACGTCCGCCAGGCTCTGGTGCCTCCACCCCCTCCTGGAACCCCGTATGAGCTGTCACTTCATGGGGTCCCTCCTGGGGGCAAGCCCTCTGACCCCATCATCTACCAAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.911 C2=0.847
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=31.5)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGTCAGGGCCAACACAG
R:
GAGGGACCCCATGAAGTGACA
Band lengths:
345-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)