HsaEX0062457 @ hg19
Exon Skipping
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:11398]
Coordinates
chr6:31946680-31948325:+
Coord C1 exon
chr6:31946680-31946775
Coord A exon
chr6:31947191-31947330
Coord C2 exon
chr6:31948228-31948325
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATCTCTGCTTGTAGGTC
3' ss Score
10.19
5' ss Seq
CACGTGAGA
5' ss Score
5.23
Exon sequences
Seq C1 exon
AAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGA
Seq A exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
Seq C2 exon
GCATCTGGTGAATGCTGGAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTACTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(15.7=100)
A:
PF104944=Stk19=FE(20.6=100)
C2:
PF104944=Stk19=PD(12.9=37.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGAGCAGGGGGAGATC
R:
TTAACAAAGTACTTGATGAATCTCCC
Band lengths:
186-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)