BtaEX0034928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27198495-27206573:-
Coord C1 exon
chr23:27206414-27206573
Coord A exon
chr23:27199782-27199921
Coord C2 exon
chr23:27198495-27198592
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATCTCTGGTTCCAGGTC
3' ss Score
10.13
5' ss Seq
CACGTGAGA
5' ss Score
5.23
Exon sequences
Seq C1 exon
TCGTGGTCTCTTTCCTCAACAGCTTTCTACTTCTTCCCCGCCGCGAAAAGATCCCGGGATATGAGCCGGAAGAGGCATCGCCTGGTCCCGGAGACGTTTGGGTTGAAGAGGCGGCGGGAACTGGGGGATGTAGAGGCAGATCCTTTGCGGGGCGAGTCAG
Seq A exon
GTCCTCAAAGCTTGTGATGGCCGCCCATATGCTGCCGCAGTACAGAAGTTTCTGGCTTCCGTGCTTCCAGCCTGTGGTGACCTTAGCTTCCAGCAAGACCAAATGACACAGACCTTTGGCTTCAGGGACCCAGAGATCAC
Seq C2 exon
GCAGCTGGTCAAAGCTGGGGTGCTCACTGTCCGAGATGCTGGAAGTTGGTGGCTCGCAGTGCCTGGAGCTGGGAGGTTCATCAAATATTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF104944=Stk19=FE(21.2=100)
C2:
PF104944=Stk19=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTCTCTTTCCTCAACAGC
R:
TTGATGAACCTCCCAGCTCCA
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development