DreEX0075985 @ danRer10
Exon Skipping
Gene
ENSDARG00000086628 | stk19
Description
serine/threonine kinase 19 [Source:ZFIN;Acc:ZDB-GENE-000616-11]
Coordinates
chr3:56537755-56546615:-
Coord C1 exon
chr3:56546470-56546615
Coord A exon
chr3:56545968-56546203
Coord C2 exon
chr3:56537755-56537852
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTCCGTCTGCTCAGAAT
3' ss Score
6.94
5' ss Seq
CACGTAAGG
5' ss Score
7.47
Exon sequences
Seq C1 exon
ACGGAGCCACTGATATTCGCTCAAGCATACAGTATTTGATGACGCTGTTTTCACGCAAACTTTTCAACGACACACTTCCTCCAGTCGTCCTGAAACACCAGCTGTACAGTTTACACACTGACAAAACCTCAGTGGACAAGCATGTG
Seq A exon
AATGATTTGCGTGAAAACGGCGAGCTGCTGATGTTCCAGCTGGGCTTCGACTCGGAGGCCTTCGCTCTGGTGTTTGCTGAGGATTACAGAGCCAAAGTCCTTCAGGAGGAAGCTGGAAGAAAAACCCTGGGAGCCGCTGAGAAGTTTCTGGATAAGCTCATTCCCGGCTGCTCCGATTTAAGTTTCAACAAAGACAAAATGCTGAAAGAGTTCCTCTTCTCCGACTCTGAGATCAC
Seq C2 exon
GCAGCTGGTGAAGTCTGGTCTCCTCACTGTGAGAGATGCAGGCAGCTGGTGGCTCTCAATCCCAAACTCTGGCAGATTCATTAAGTACTTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086628-'1-5,'1-2,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(21.3=100)
A:
PF104944=Stk19=FE(34.7=100)
C2:
PF104944=Stk19=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCCACTGATATTCGCTC
R:
TGAAGTACTTAATGAATCTGCCAGA
Band lengths:
237-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]