MmuEX0045404 @ mm9
Exon Skipping
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34968958-34973511:-
Coord C1 exon
chr17:34973375-34973511
Coord A exon
chr17:34969391-34969486
Coord C2 exon
chr17:34968958-34969097
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCATCTCTGTGGAGACAGAAG
3' ss Score
-1.19
5' ss Seq
CGGGTCTGT
5' ss Score
3.55
Exon sequences
Seq C1 exon
GCTCGGCGCGCGAGGCCATCGAGGAGCTCGTGAAGCTGTTTCCCCGGGGGCTGTTCGAGGATGCGCTGCCGCCCATCGCGCTGAGGAGCCAAGTGTACAGTCTGGTGCCAGACCGGACGGTGGCCGACCTACAACTG
Seq A exon
AAGGAGCTTCAAGAGCTGGGAGAGATCCGAATTATCCAGCTAGGCTTTGACTTGGATGCTCATGGGATTGTCTTCACGGAAGACTACAGGACCCGG
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-'1-6,'1-4,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.2=100)
A:
PF104944=Stk19=FE(13.9=100)
C2:
PF104944=Stk19=FE(20.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGTACAGTCTGGTGCC
R:
CGGGTCCCTGAAGCCATAAGT
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: