HsaEX6046422 @ hg19
Exon Skipping
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:11398]
Coordinates
chr6:31940398-31947330:+
Coord C1 exon
chr6:31940398-31940534
Coord A exon
chr6:31946680-31946775
Coord C2 exon
chr6:31947191-31947330
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTCTGTGGAGACAGAAG
3' ss Score
-0.19
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTTCCCGCGAGGCCTGTTTGAGGACGCGCTGCCGCCCATCGTGCTGAGGAGCCAGGTGTACAGCCTTGTGCCTGACAGGACCGTGGCCGACCGGCAGCTG
Seq A exon
AAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGA
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-'4-19,'4-18,8-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.2=100)
A:
PF104944=Stk19=FE(14.2=100)
C2:
PF104944=Stk19=FE(20.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCCTTGTGCCTGACAG
R:
AGTCCCTGAAGCCAAAGGTCT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)