BtaEX6098277 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27199782-27206259:-
Coord C1 exon
chr23:27206123-27206259
Coord A exon
chr23:27200223-27200318
Coord C2 exon
chr23:27199782-27199921
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCATGTCTATGGAGGCAGAAG
3' ss Score
-2.19
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GATCTGCGCGAGAGGCAGTCGCAGAGATAGTGCGGCTGTTCCCGCGAGTACTGTTTGAGGATGCGCTACCCCCCATCGCGCTGAGGAGCCAGGTGTACAGCCTCGTACCGGACCGAACCGTGGCTGACCGGCAGCTG
Seq A exon
AAGGCACTGCAAGAGCAGGGGGAGATCAGGATTGTCCAGCTAGGCTTCGACTTGGACGCCCAAGGAATCATGTTCACCGAGGACTACAGGACCAGA
Seq C2 exon
GTCCTCAAAGCTTGTGATGGCCGCCCATATGCTGCCGCAGTACAGAAGTTTCTGGCTTCCGTGCTTCCAGCCTGTGGTGACCTTAGCTTCCAGCAAGACCAAATGACACAGACCTTTGGCTTCAGGGACCCAGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589-'3-9,'3-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(20.3=95.7)
A:
PF104944=Stk19=FE(14.3=100)
C2:
PF104944=Stk19=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCGCGAGTACTGTTTG
R:
GAAGCACGGAAGCCAGAAACT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]