MmuEX0045405 @ mm10
Exon Skipping
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34824751-34836566:-
Coord C1 exon
chr17:34836430-34836566
Coord A exon
chr17:34832013-34832152
Coord C2 exon
chr17:34824751-34824848
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACATCAACTCTGGTTCTAGGTC
3' ss Score
7.47
5' ss Seq
CACGTGAGA
5' ss Score
5.23
Exon sequences
Seq C1 exon
GCTCGGCGCGCGAGGCCATCGAGGAGCTCGTGAAGCTGTTTCCCCGGGGGCTGTTCGAGGATGCGCTGCCGCCCATCGCGCTGAGGAGCCAAGTGTACAGTCTGGTGCCAGACCGGACGGTGGCCGACCTACAACTG
Seq A exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
Seq C2 exon
GCAGCTGGTGAACGCTGGGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTGCTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.2=100)
A:
PF104944=Stk19=FE(20.6=100)
C2:
PF104944=Stk19=FE(14.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCATCGAGGAGCTC
R:
ACAAAGCACTTGATGAATCTCCCA
Band lengths:
219-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types