MmuALTA1039705-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34824751-34832152:-
Coord C1 exon
chr17:34832013-34832152
Coord A exon
chr17:34824845-34824848
Coord C2 exon
chr17:34824751-34824844
Length
4 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGA
5' ss Score
5.23
3' ss Seq
TGGCTGCCTACCACCTGCAGGCA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
Seq A exon
GCAG
Seq C2 exon
CTGGTGAACGCTGGGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTGCTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-7-17,7-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.6=100)
A:
NA
C2:
PF104944=Stk19=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCAGTTTCCAGCAGGA
R:
TTCCAGCATCTCGGACAGTGA
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types