BtaALTA0028949-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27198495-27199218:-
Coord C1 exon
chr23:27199118-27199218
Coord A exon
chr23:27198589-27198592
Coord C2 exon
chr23:27198495-27198588
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTTCATCTCCACTCTCTTAGGCA
3' ss Score
6.86
Exon sequences
Seq C1 exon
CCTGGAGAATCCCATGGACAGAGGAGCCTGGCCGGCAGCAGTCTGTGAGGTCGCCATGGAGTTGGACATGGCCTAGCAACTAAAGAACAAACAGTGGTGAG
Seq A exon
GCAG
Seq C2 exon
CTGGTCAAAGCTGGGGTGCTCACTGTCCGAGATGCTGGAAGTTGGTGGCTCGCAGTGCCTGGAGCTGGGAGGTTCATCAAATATTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589-16-13,16-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=PD(1.6=7.1)
A:
NA
C2:
PF104944=Stk19=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCATGGAGTTGGACATG
R:
CCAACTTCCAGCATCTCGGAC
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development