HsaALTA1055855-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31979414-31980548:+
Coord C1 exon
chr6:31979414-31979553
Coord A exon
NA
Coord C2 exon
chr6:31980451-31980548
Length
0 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGA
5' ss Score
5.23
3' ss Seq
TGGCTTCCCACTGCCCTCAGGCA
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
Seq A exon
NA
Seq C2 exon
GCATCTGGTGAATGCTGGAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTACTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-13-22,13-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(21.0=100)
A:
NA
C2:
PF104944=Stk19=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCAAGGCCTGTGATGG
R:
AACAAAGTACTTGATGAATCTCCCA
Band lengths:
234-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains