DreALTA0028597-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000086628 | stk19
Description
serine/threonine kinase 19 [Source:ZFIN;Acc:ZDB-GENE-000616-11]
Coordinates
chr3:56537755-56546203:-
Coord C1 exon
chr3:56545968-56546203
Coord A exon
chr3:56537849-56537852
Coord C2 exon
chr3:56537755-56537848
Length
4 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGG
5' ss Score
7.47
3' ss Seq
AGAAGTTTTTGTGCCTTCAGGCA
3' ss Score
5.27
Exon sequences
Seq C1 exon
AATGATTTGCGTGAAAACGGCGAGCTGCTGATGTTCCAGCTGGGCTTCGACTCGGAGGCCTTCGCTCTGGTGTTTGCTGAGGATTACAGAGCCAAAGTCCTTCAGGAGGAAGCTGGAAGAAAAACCCTGGGAGCCGCTGAGAAGTTTCTGGATAAGCTCATTCCCGGCTGCTCCGATTTAAGTTTCAACAAAGACAAAATGCTGAAAGAGTTCCTCTTCTCCGACTCTGAGATCAC
Seq A exon
GCAG
Seq C2 exon
CTGGTGAAGTCTGGTCTCCTCACTGTGAGAGATGCAGGCAGCTGGTGGCTCTCAATCCCAAACTCTGGCAGATTCATTAAGTACTTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086628-3-6,3-5,3-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(34.7=100)
A:
NA
C2:
PF104944=Stk19=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAGCTCATTCCCGGCTGC
R:
TGAGGAGACCAGACTTCACCA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]