MmuINT1032336 @ mm10
Intron Retention
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34824751-34832152:-
Coord C1 exon
chr17:34832013-34832152
Coord A exon
chr17:34824849-34832012
Coord C2 exon
chr17:34824751-34824848
Length
7164 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGA
5' ss Score
5.23
3' ss Seq
TGGCTGCCTACCACCTGCAGGCA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
Seq A exon
GTGAGATGTGGTGGGGTCAGTAAAAGTTCACAGGGTCCCCTGTAAAGTACTAGGCAAGGTCTCAGTACAGAAGGATTTTAGGGTACCACACCTGTGTCAGGCCTCCTGCTTTCTAACTTGCTGGTATGGGAACTCACTGATCTCCCCTGGGAAGTAGCAGGGACAGAGTGGGGAGAGTTCATAGGTCATGGTGAGCCCAGAGATGACGCTTACTCCTCAGGCACATTTCAGAGCCTTTGCTCAGGGAGGGCTTCCCAAGGACACTGTTTTATGACCAAGCAGTCTCCACCAAGAGGCCTGGGGAGCTGGCTTGCTTGGAAAAGTCCATGCTGTGTGAGCATGGGGGCCTGAGCGAGCTGCAGTTCCGGCACCCCCATAAGCTGAGCACAGTGAGGTGCCTGGGACCCCTGTGCTGGAAGTCAGGAGAGAGGCTAGCAAAGTGCACCCAAGCCAATGAGCTCCAGGTTCAGTGAGAGTCGCTATCACAAAAAATAAGGTCCAGCTAAGTGTGATGTTGCACACCTTTAATCGCAGCACTCGGGAGGAAGAGTCAGGTGGATCTCAGAGTTTGAGGTCAGCCTGGCCTACAGAGCAAGGTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAATAAAAGGAAAAAAAAATAGGTCAATGTGAAAGATCCCTGAAGATGGGAGACCCTCACTCAATTGTAGGGATGACGCGACCCCCCCCCCCCAAGAACTCACGAGAGACCATCCTTGCTGCAATTGCACAAGGTTTATTGACAGGAACCAGCACGCTGGGGCCAACTCGTATCCCACGCAGGGGTAGAGGAGTTCAACCTCGAGCAGCTGGGAAAGGGGGTATTTAAAGGAAAAACTATAACCCAAGTGGGTAGGGAGGGTGTTATTGGAAAATACCAGTGAAGAATCACAAGGGGGAACTAAAAATCACAAGGGGAAACTCCCTGCTTCTCAAGATTGTTCTCAAGATTTTAATCTAACTTGTCCTGGAACAAGGTCACTGAACCTGCTTATGTAATTATCTGTTCTGTGGTCAGCCAGTTCTCAGAACAGGCTATTTCAGGGCCCAACTATTTTTCTTTCTTGGCTCTAACTTGGTCTGTGGGGTCAAACTTAAATTTTTTACCTTACATTCCCCAGTTCTAGTGGCTAGTTCTAATCATAGAACTAAATTTTAGTATCTTTACAATATTGATTTTTTTTGACTTTCTAAAGTATGATATTGTTGGCGTAACATCAAAATCTGAACAGCACTCACTCTTTCTCTAATAAAGGTAACTAACTTACTTAACACACATGGACCTATTATTAAAAGCAGAAGCAAAATCAAAAGGGGTCCCATAAGGGTAGATATCAAAGTAGTCATCCAAGGAGATCTACTAAACCCGCTCTTGAACCATCCCTGATGTGCTTCTCTGTCTCTCTGTTGTTTGTCTAACCTTTCTCTAAGTCTTTAATTATTCCTGAATGGTCTACATAAAAACAACAAACAACATTCTTCTCTGAGAGCAGCGTATAATCTTCTGTCTTTTAAGAATAACAAATTTAATCCCCTTCTATCTGTAAGACTACTTCTGAAAGGGAAGTTAAAGACTCTTTAAGCTTGGAAATAGATTGTTCCAGAGCCCTCAAATCTTTATCCAAGGCTATTCTTAATTCATTAAAGTACTGAGGGGCCTGTATTAGGGCAGCGGTGCCTGTCACAACACTGGTGGCTACCCCGAGATCCAGGATTACTGCTAGTGTCAAAGAGACAGGCTCTCTCTGAAAACGGGTTGGGCACTTGTCAAACTCATCTTTAGATGGTTCCGGGGCCCACTTCACGAGGTAGGCTTGGATCCCAGCGGAAATATCTTTAACTTTCACCGCTGTAGGGGTCATCAGGAGTACCAAGTATGGCCCTTTCCAGCAAGGTTCCAGATTCCCCACTTGATGGTGTCGGACTAGGACAGTGTCTCTGACCTGGAACTGGTGGGGCACGTCCGGACTCCCAGTCTCATAGGCCTCTTTCAGTTGTTCCCAGGCTTGGCGTCTCACCTCAAGGGCCTTTAAATGGGCAAACAGGGGTTTAGAAAGAACAGCATCAGGATCATGTACTCCACCTGACTCAGTGAGCAGGCGGTCCCCCACACAGGATCTAATAAGGGGTGACTTTAAATCACCCTGGAGTGTTCCGAACTCGGAACAGGGCAAAGGCAAGGAGGGCTGTCCTGTCATTCCTGCCGGTCTCTAAGGCCAATTTTCTTAGGGTCTCTTTTAGGGTTCTATTCATCCTCTCTACCTGACCTGAGCTCTGGGGTCGGTAAGCACAATGTAATTTCCAATTAATCCCCAGTTGAGTGGCCAGTCCCTGCCTTACCTGGGCAACAAAGGCAGGTCCATTATCAGACCCAATTACCTTGGGTATTCCGAACCTTGGGAAGATTTCTTCTAGGATCTTCTTGGCTACCACGTTGGCCATCTCAGTCCTGGTAGGAAAAGCTTTTACCCAGCCTGAAGACACACATGTATTGGTTCACTTTACATGGTGTTGTCTGTAAACACTAATAAGTACTTGTTGTCATATCTAGCTGGCTTAATTTCTGTAAAATCTACCTCCCAATAGGCCCCAGGCTGGCAACCCCTGAGCCTCTTCCTAGGAGTATATATGGAGTGTCCTGCATTAGACATAGCACAGGCCTTGCAGTTTTGACTATTTCCTCTGCCAAGTCAGAGAGTCCTGTAACATAGTAGTCAGAGGACCTAACCACACCTTTTAATTTCTTGGCCCCCAAGTGGGTCAGGTAATGTAAGTTGGTAACATACTTGTGTTCTTCTTCCCGTGGGACGACTAGTTTTCCTTCTTCTGTTTCTACTACCCCATATGGGGTTTCCTTTATCAGTCCTAATTTGTCCTCAGGGGTGTATCTAAAGCTGGTCTCTCTGACATCATATAATCTTTAGGCTCTTTGACTGCCAGGATCATTGCTCCTTGGGCCGCCTGTTTGGTGGTTAGGTCTGCCATCTGATTCCCTTTAGCCATACCAGTTTTCTGGTGTCCTGGACAATGTATAATGGCTTCCTTCTTTGGTAAGTGTATGGCCTCGAGGAGGCTCAAAATTTCCTCTTTATTTTTTATGTCTTTCTCTGCAGATGTCAACAGCCCTCTCTTTGTCTCTATATTGCTCCATGTATATGGGCAGTGGCAAAAGCATACCTGCTGTCAGTGTAGATGTTGATAGACTTCCCCTCTGCCATTTGTAGAGCTTGTATCAAAGCCACAGGTTTGGCTTTCTGGGCCGACGTCCCTTCAGGGAGGCTGCTGGCCCAGATCACTTGCTTCCTGTCCACTCCTGCTGCCCCTGACTTCCGCTTACCTTCAACCACGAAGCTACTGCCATCCGTGTACCAGCTCTGACTCCCAGGCCAAGGCTGATTGTTCAGATCATTTCGAGTACCAGTTTCCTCTGCTAGGATGTCAGCGCAGTGATGAGTAGGTGAAGAGTCATTAGTCTCGGGCAGTAGGGTAGCAGGATTGAGGACAGCAGGGGGTGGTGGTGGTGGGGGTGGTGGTATGGGGGTGGTGGGTGGTGGAGCGAAGGTCACTCGTTCAGTCGTTCAGTCAACCAAAGGCTCTGATAATGTGTCATACGAGTGTTGGTCATCCATCGGTCTGGGGGCTGTCAGATAATGCTTTCAAGAGCGTGGGGTGCCGCTACAGTTATTTGCTGTCCCAGAGTGAGCTTATCAGCATCCTTGTCAAGCAGAGCTATGGCAGTAATAGCTTTCAAGCAAGAAGGCCACCCGCTGGCAACAGGGTCTAACTTGTTGGATAGGTAAGCCACTGGCCTTTTCCAAGGTCCCAAAGTCTGAGTAAGGACTCCTCATGCAGTCCATACTCCTCTTCGAGCCTCAGGGCCAATACTGTGGAGGTGGGAGTTTTCCATGTCACCTCTGGCCCAGTTCGAATAAACCTGACCTGGGCCTTCAACTTTGTTAACAAGTCTCTTCCTAGTAAAGGCAGGACACTCAGGAATAACCAGGGAGGAATGGGTTACTTGTCCTCTCCCCAAATCTACAGTTTATGAGGTGGTCCATGGATATTGTTTCTGTCCAGTTGCCCCTATTGCTGTAGTCTTCTTGTTTTTTAACTTCCCCAACAGGGAAGCACAGAGTACTCTGCCCCTCTGTCTACCAGAAAGTCCATAGGGGTCCCCTCCACAGTCAGGGTTACCCTAGGCTCGGGGAGGGGGGGTCTGAGTCCCATCCCCTCTAATCATCATCTTCTAGGGCCATTATCTTAGGGGCCCTCCCTTTCTTCTTTGGGCACTCTCTTGTCCAGTATGCTTTTTCTTTGCAATAAGCACATTGGTCTTTATCCAAGGGTGCCTCTGTCCGTCATCACTCATCCTTGGTCTTCTGTTGCCCAGGTTTCCTGTCTGTCTAGGTCCTGTCTTTTCTTTCTTTCCTACCACTGCGGCCAAAATTCTAGTCAAATTTCTCTCTTGCCTACGATCCCTCTGGTCCTCTCTTTCCTCTGCCTCCCGCCCCTCTCTCTCTCTTTCTTCTCTTCCTCAGTCTCCCACTTATGAAACACTTTCTTTGCCTCCTTAACCAAATCCTGCAAGGTATAATCCTGCAACCCTTCTAGCTGCTGTAACTTTTTCTTAATATCTGATGCTGACTGCCCTATAAAGGCCATAGCCACCACAGCTTGCTGACCCTCAAAGGTTGGGTCAAAGGGAGTATAACGCCGATAAGCCTCCATTAAACGTTCAAGAAACACAGATGGTGGTTCAACAGGCCCTGAAGAACCTCTTTTACCTTAGCCAAATTGGTGGGGTGTCTAGCAGCCCCTTTCAGCCCTGCCACAAGAGCCCGGCAGTTGACCATCAGCTGCTCCCTACTTGCTGCTGTATTGAAGTCCCAATCAGGTTGGTTAAGGGGAAACCTGGCATCTATTTCATTTGGAAGACTGGTTGGTGCCCCATTTGCTCCGGGGATGTTCTTCCGGGCCTCCAACAGGATCCTCTCTTTCTCTTCTGTAGTGAAGAGGACCTGTAAAAGCTGGAACAATCATTCCAGGTGGGTTGGTGGGAAAATATCAAAGACTCCACCAATCCTGTCAGGCTGGTGGGATTCTCTGGAAAGGATGGGTGATTAGTTTTCTAGTTACAAAGATCAGCAGAGGAAAATGGCCAGTACTGAAGGGGTTGAAGGTTCTCGGGCCCACCGGAGCTCTGTAGGTACGCAGCACAGACTCACGGTACAGTCTGGTCCATCCATATTCTGCGCTCTCCAGCTCTGTGTACCTGCAGCGGGTCTACCTCTCACCACCCCGAGAGGTTCGGGGTTCCCTGGCAGTGGGGGTTGAGGCTGTGGATAAGGGGAGAAGCCTTCACTTTCGATTTATCCTTTGGTGTTTCACAGAGAGCCAGGACTGGGGAGCCTAGCTTTTGTTCACGCACCCAGGGTTTGACCCAAGACGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTGTTCTGAACCAGATCTTGCCACACTGTGATGTATGGTTGCTGATCGGGATGGGATCCCAGCCCTTCCTAAAAGACAATGGCTTTAATTTCAAGAATGATGGTTAAGTCAAAGGTCCCCTCTGGACGCTAGCTGACATCAAACTTCGGCCAGTCCGAGGAGCAAAAAGTCTGCCATGATCCTTTCTTAATCTCAACTGACAAGTTGTGTGCTCTAGACCTAACTTCAGTCCAGTGATTCAAAGTCAAACTCAGAGGAGTCATCACAGTCTGTCCCATCATCAAAGTCACAAGTAAGACAAAACAGAGACCTAAGACACAGAAAGGCTAACAGATGTCCGACTCCACCTAGATAGATAAAACCACTCCAGAAATAAAAGACAGCCGGGAGGGCATGTAGCTTCTCCAATCCAGGAGAACTACCGTATCCTCACCAGCACCCAGGTAGGAATCTCCCGGGCGTCCATGGGGTCCCTCCTGACCTCCTGGGACAGGCGGCAGTTGGTGATCTCCTAGCACATCTGCTGATCACACCCTCCGTCTCCTCCGGAGACCTGAAACATGAGACATGAGCTACTGCGAGAAACTGAAAGTACAGAACTCAGCTGGCACAGAAACACAAAGACACAACGTCTCACCTTCAAGTGGGTCTTTGGAGATGACGGTGGTCGCAAATCTTGGGATGAGCCCCCAAGATGAAACCCCCCCAAGGAGGGGAGACCCTCACTAAAGTCTCTGGATGATGCAACCCTCCAAGAACTCATGAGAGACCGTCCTTGCTGCAATTGCACAAGGTTTATTGACAGGAACCAGCGCACTGGGGCCGAATTGTATCCCACGCAGGGGTAGAGGAGTTCAACCTTGAGCAGCTGGGAAAGTGGGTATTTAAAGGAAAAACTATAACCCAAGGGGGTAGGGAGGGTGTTATTGGAAAATACTGAAAATACCAGTGAAGAATCACAAGGGGGAACTAAAAATCACAAGGGGAAACTCCCTGGTTCTCAAGATTTTAATCTAACTTTTGTGGTTGGCCAGGTCCTGGAACAAGGTCACTGAACCTGCTTATGTAATTATCTGTTCTGTGGTCAGCCAGTTCTCAGAACAGGCTGTTTCAGGGCCCAACTATTTTTCTTTCTTGGCTCTAACTTGGTCTATGGGGGTCAAACTTAAATTTCTTACCTTACAAATGTTTTAAGAGCACTGACTGCTCTTCTAGAGGACCCAAGCTCAATTCCCAGAACCCACAAAATGGCGCTCAATAGTTTATAACTCCAGTTTCAGGGGACCCAGTACCCTCTCTGGCCACCACAGACACTGCATGCATGTGCATAAACATGTAGTCAAAGCACAAATACACATAAAAAATATCTTTATAGAAGTCAACAGTTATTGCACATACTTAATGTAAACCTGTAGCCTCTACATGCTTGTGTACCTGCCCAGACAGTATATGACACGCACACACCCACACACTCCCCCACACCCAGGCAGCAGTGGTGGACCCAACAGGGTAAGTGGGTCCCTGCTTGGGTTGCCTGTGTTTCTGGAAGCTCAATGTCCACGCATCAGCAGTTGGGGAAGGGAGGGTTCTCAGCCCAGGCTGCATCATCATGGCTGCCTACCACCTGCAG
Seq C2 exon
GCAGCTGGTGAACGCTGGGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTGCTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207:ENSMUST00000077477:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.6=100)
A:
NA
C2:
PF104944=Stk19=FE(14.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types