HsaINT1043195 @ hg38
Intron Retention
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31979414-31980548:+
Coord C1 exon
chr6:31979414-31979553
Coord A exon
chr6:31979554-31980450
Coord C2 exon
chr6:31980451-31980548
Length
897 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGA
5' ss Score
5.23
3' ss Seq
TGGCTTCCCACTGCCCTCAGGCA
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
Seq A exon
GTGAGACTTGTGGAACCAACCAAAGTCAGGCATCTGGTGCTTCCCTGCCTCCCTCCAGTTCCATCCAGCCTGTCCTCCTGTTTTTTTGGTGAACCTGCCAGAAAAGCTGCCAAAAAGCTGACTCTTCTTGTTAATAAAATGACCCAAGTTTGTATTCCTCCCCACAAGAGAGGAGGCCTATCTTACCTGGGCCTTAGAAAGAGCCCTGAAATAGAATTCAGTTCTTGGTGGCTTATCAAAAGCACACAGGGGCCTGGCAGGAAGTGTAAAAGCTTGATGTTAATCATACTGGGACTAAGAGGATAGAGAATGGTAGGAGCTGGGATACCCCTAAACATTCACATTAAAACAAAAAAAACCCAAAGCTAAAAAACAACTGGGCAGGAGCTAAATAAAAATCTAATTTTGAGAGGCTGTATCTGGCTCAGGCCTCCTACTTTGTAACCCATGGAATATGTGAAAGCATTTGAAAAACTATAGCACTGATCTCACATGGGCAGACACACTCTCAGAGAGATGTGGTGGGAGCCATGGCGCAGTCTGCCTAGGCAGTGGCAGGAGCGCAGAAGACTCTGATTCCTCTCCTCGGTCCTAAGACCGAATGTGTGTCAGGACATGTGGTCAGGGAAGAGAAGCTATTTAACTGAACCAGTAATAGTAGCAGGAAAAGAAAAAGTGGAGGGAGGGCAGTCCAGGTAGGGGGCCTGGAACAAGCAACTGCACCAACAGAGGCAGTTGGTGCGAGCACAGAACCACCCCAGGCTGGGATTTTGTTATCCAGTCTCTCTTGCATGGTTGCCCGTGTTTCTGGAGACTTGTGTAAACATTAATGGATGAGGAGGAGAGATGGTTCTCAGAGCCCAGCCCTCATCTCTGCTGGCTTCCCACTGCCCTCAG
Seq C2 exon
GCATCTGGTGAATGCTGGAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTACTTTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344:ENST00000375331:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(21.0=100)
A:
NA
C2:
PF104944=Stk19=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCAAGGCCTGTGATGG
R:
AAGTACTTGATGAATCTCCCAGCT
Band lengths:
230-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains